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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019347
Reference: OH-1004 Chr: Chr04 Coordinates: 29406695-29423226 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

13725 bp · LXL04_019347|LXL04_019347|OH1004|cDNA

ATGAGCAGCAGCAGAATAAGAAACTTCCGTCGTCGATCAGAGGACGACGACAATGAGGATGAAGATAAAGAAAAAACAACCACCCCTgccgccaccaccaccatcagCAAAAAACAACAATCAAAGCCTGCCACAGCCACTCCAAAACCTAAGAAACCTAGTCTCCTTAGCTTTGCCGATGACGAATCTACGGACTTCATTACTCCAATCACTCGAAGCGCCCTTCTAATCCAATTAAACAACCTACCAATTATTGACGA...

CDS

Download CDS FASTA

13725 bp · LXL04_019347|LXL04_019347|OH1004|CDS

ATGAGCAGCAGCAGAATAAGAAACTTCCGTCGTCGATCAGAGGACGACGACAATGAGGATGAAGATAAAGAAAAAACAACCACCCCTGCCGCCACCACCACCATCAGCAAAAAACAACAATCAAAGCCTGCCACAGCCACTCCAAAACCTAAGAAACCTAGTCTCCTTAGCTTTGCCGATGACGAATCTACGGACTTCATTACTCCAATCACTCGAAGCGCCCTTCTAATCCAATTAAACAACCTACCAATTATTGACGA...

Protein

Download Protein FASTA

4574 aa · LXL04_019347|LXL04_019347|OH1004|PROTEIN

MSSSRIRNFRRRSEDDDNEDEDKEKTTTPAATTTISKKQQSKPATATPKPKKPSLLSFADDESTDFITPITRSALLIQLNNLPIIDDSLTNTKEGDEESDRDETMNRLGSIRLGGKIGKGGNLGGGVIPDQAMIDAIRAKRERLRQSRGAALDFIALDGGSNHGEAEGLSDEEPEFQGRIALIGEKGDAKKGVFEDVVDVSNATFRKENVGNDSDDGVEDEEDEEDKMWEEEQFRKGLGKRIDEGVAVRGVNSSTIPTIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019347
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019347
LocationChr04:29406695-29423226 (+)
DescriptionSimilar to ILP1: Transcriptional repressor ILP1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g08550 Transcriptional repressor regulating endoreduplication through control of A-type cyclins expression.
Increased level of polyploidy1, a conserved repressor of CYCLINA2 transcription, controls endoreduplication in Arabidopsis.2006 · DOI: 10.1105/tpc.106.043869

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019347 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0042023 DNA endoreduplication Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0030371 translation repressor activity Molecular Function
KEGG gene cross-reference
ath:AT5G08550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.664
Rank 1 · LXL04_019347 · OH-1004
Cytoplasm0.426
Rank 2 · LXL04_019347 · OH-1004
Mitochondrion0.030
Rank 3 · LXL04_019347 · OH-1004
Cell membrane0.022
Rank 4 · LXL04_019347 · OH-1004
Endoplasmic reticulum0.021
Rank 5 · LXL04_019347 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15458.12NTR2127-242 aa
PF15458.12NTR2460-661 aa
PF15458.12NTR2816-936 aa
PF15458.12NTR21153-1351 aa
PF15377.12DUF46041438-1503 aa
PF15458.12NTR21570-1776 aa
PF15458.12NTR21989-2190 aa
PF15458.12NTR22456-2591 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019347PF15458.12NTR21272427e-67226.2
LXL04_019347PF15458.12NTR24606617e-67226.2
LXL04_019347PF15458.12NTR28169367e-67226.2
LXL04_019347PF15458.12NTR2115313517e-67226.2
LXL04_019347PF15377.12DUF4604143815037.9e-1143.4
LXL04_019347PF15458.12NTR2157017767e-67226.2
LXL04_019347PF15458.12NTR2198921907e-67226.2
LXL04_019347PF15458.12NTR2245625917e-67226.2
LXL04_019347PF15458.12NTR2280830107e-67226.2
LXL04_019347PF15377.12DUF4604309331587.9e-1143.4
LXL04_019347PF15458.12NTR2322634277e-67226.2
LXL04_019347PF15458.12NTR2369338307e-67226.2
LXL04_019347PF15458.12NTR2404541617e-67226.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNN3Arabidopsis thalianaTranscriptional repressor ILP144.868%Swiss-Protweak database homology

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