LXL04_019328 | RubberDandelionOmics

Gene overview

LXL04_019328

Reference: OH-1004 Chr: Chr04 Coordinates: 29028512-29031198 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1674 bp · LXL04_019328|LXL04_019328|OH1004|cDNA

ATGGCAAGCAAAGAGGTTCAATGGAAGTTAGCCGATCATCCGAAACTCCCGAAGGGAAAGTTGGTAGCGGTGGTGGTTTTGGATGGCTGGGGTGATGCTTCTCCCGGTAAATACAACTGCATCCATGTCGCCGAAACACCTACCATGGATGCTCTGAAAAACACCGCCCCTGATAAATGGAGATTGGTGAGGGCTCATGGTACTGCCGTCGGGCTTCCCACCGAAGACGACATGGGAAACAGTGAAGTAGGACATAACGC...

CDS

Download CDS FASTA

1674 bp · LXL04_019328|LXL04_019328|OH1004|CDS

ATGGCAAGCAAAGAGGTTCAATGGAAGTTAGCCGATCATCCGAAACTCCCGAAGGGAAAGTTGGTAGCGGTGGTGGTTTTGGATGGCTGGGGTGATGCTTCTCCCGGTAAATACAACTGCATCCATGTCGCCGAAACACCTACCATGGATGCTCTGAAAAACACCGCCCCTGATAAATGGAGATTGGTGAGGGCTCATGGTACTGCCGTCGGGCTTCCCACCGAAGACGACATGGGAAACAGTGAAGTAGGACATAACGC...

Protein

Download Protein FASTA

557 aa · LXL04_019328|LXL04_019328|OH1004|PROTEIN

MASKEVQWKLADHPKLPKGKLVAVVVLDGWGDASPGKYNCIHVAETPTMDALKNTAPDKWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFNYIKESFANNTLHLIGLMSDGGVHSRLDQLQLLLKGAGERGAKKIRVHVLTDGRDVLDGTSVTYAETLEKDLSDLRAKGIDAQIASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKSAVEAIKKLREAPNANDQYLPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019328`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019328

Location Chr04:29028512-29031198 (+)

Description Similar to PGM1: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g08590`	Catalyzes the interconversion of 2-phosphoglycerate (2-PGA) and 3-phosphoglycerate (3-PGA).	The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/err223
`At1g09780`	Catalyzes the interconversion of 2-phosphoglycerate (2-PGA) and 3-phosphoglycerate (3-PGA).	The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/err223

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019328 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006007 glucose catabolic process Biological Process

GO:0006096 glycolytic process Biological Process

GO:0009409 response to cold Biological Process

GO:0009555 pollen development Biological Process

GO:0009637 response to blue light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010037 response to carbon dioxide Biological Process

GO:0010118 stomatal movement Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005740 mitochondrial envelope Cellular Component

KEGG gene cross-reference

ath:AT1G09780

ath:AT3G08590

zma:542578

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.686

Rank 1 · LXL04_019328 · OH-1004

Nucleus0.258

Rank 2 · LXL04_019328 · OH-1004

Mitochondrion0.153

Rank 3 · LXL04_019328 · OH-1004

Cell membrane0.125

Rank 4 · LXL04_019328 · OH-1004

Endoplasmic reticulum0.090

Rank 5 · LXL04_019328 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01676.24Metalloenzyme22-543 aa

PF06415.19iPGM_N102-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019328	`PF01676.24`	Metalloenzyme	22	543	3.6e-85	286.2
LXL04_019328	`PF06415.19`	iPGM_N	102	322	3e-58	197.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M9K1`	Arabidopsis thaliana	Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2	79.640%	Swiss-Prot	strong database homology
`O04499`	Arabidopsis thaliana	2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1	80.692%	Swiss-Prot	strong database homology

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