LXL04_019278 | RubberDandelionOmics

Gene overview

LXL04_019278

Reference: OH-1004 Chr: Chr04 Coordinates: 27872097-27877916 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2178 bp · LXL04_019278|LXL04_019278|OH1004|cDNA

ATGGCTTTCCCAACAAAATTCTCAATACAATCTTTCCTAAAACAAGTAAAGGAACTGAAAGAACCCCAAAGAAACTCCATCACCCAAACGGGATTCGGCCATTTACTGCACATTCCACCTCACACCCTCCGTAGATCCCAATTACTCCAATTAAAGGAAACATGGAATATTGAACGACAATCATTCATATTTCCTCCTGGAGACATTACAATTACCCTTTTAGATGTAGTTTTAATTCTAGGACTCCGTGTTATTGGCAA...

CDS

Download CDS FASTA

1884 bp · LXL04_019278|LXL04_019278|OH1004|CDS

ATGGCTTTCCCAACAAAATTCTCAATACAATCTTTCCTAAAACAAGTAAAGGAACTGAAAGAACCCCAAAGAAACTCCATCACCCAAACGGGATTCGGCCATTTACTGCACATTCCACCTCACACCCTCCGTAGATCCCAATTACTCCAATTAAAGGAAACATGGAATATTGAACGACAATCATTCATATTTCCTCCTGGAGACATTACAATTACCCTTTTAGATGTAGTTTTAATTCTAGGACTCCGTGTTATTGGCAA...

Protein

Download Protein FASTA

627 aa · LXL04_019278|LXL04_019278|OH1004|PROTEIN

MAFPTKFSIQSFLKQVKELKEPQRNSITQTGFGHLLHIPPHTLRRSQLLQLKETWNIERQSFIFPPGDITITLLDVVLILGLRVIGKPVVLKQDTPLTNLEQEFGASNENRFISVETLKKRLESCGERADSSFVRVFLLYCFGTLLFPSSNGKVDSRYLLLLEDLDHVSSYSWGAAVREDLHESLTLWKSKKTSNVTGCLILLQIWCYEHIVIGRAKLLDCPSTFPHILWRLQPTSEEMEIDIIKEIPQEWYLLNGPGTM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019278`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019278

Location Chr04:27872097-27877916 (+)

Description Similar to MAIL1: Protein MAIN-LIKE 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25010`	Acts as an important factor for cell fate determination and maintenance throughout plant development.	MAIN-LIKE1 is a crucial factor for correct cell division and differentiation in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12455
`At2g04865`	Maybe required to maintain cell division activity in meristematic cells.	No verified direct reference in this release
`At1g17930`	Required for the organization of the root apical meristem (RAM) and the shoot apical meristem (SAM).	Identification of MAIN, a factor involved in genome stability in the meristems of Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12215
`At1g48120`	Maybe required to maintain cell division activity in meristematic cells.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019278 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010073 meristem maintenance Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0048507 meristem development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0008483 transaminase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G17930

ath:AT1G48120

ath:AT2G04865

ath:AT2G25010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.875

Rank 1 · LXL04_019278 · OH-1004

Cytoplasm0.188

Rank 2 · LXL04_019278 · OH-1004

Mitochondrion0.035

Rank 3 · LXL04_019278 · OH-1004

Cell membrane0.031

Rank 4 · LXL04_019278 · OH-1004

Extracellular0.016

Rank 5 · LXL04_019278 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29561.1DUF85665-204 aa

PF10536.15PMD32-221 aa

PF29561.1DUF8566425-543 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019278	`PF29561.1`	DUF8566	5	204	2.5e-58	198.0
LXL04_019278	`PF10536.15`	PMD	32	221	1.7e-36	126.8
LXL04_019278	`PF29561.1`	DUF8566	425	543	2.5e-58	198.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SK32`	Arabidopsis thaliana	Protein MAIN-LIKE 1	35.565%	Swiss-Prot	weak database homology
`F4IFD0`	Arabidopsis thaliana	Protein MAIN-LIKE 2	34.979%	Swiss-Prot	weak database homology
`Q9LMT7`	Arabidopsis thaliana	Protein MAINTENANCE OF MERISTEMS	33.484%	Swiss-Prot	weak database homology
`Q9LNG5`	Arabidopsis thaliana	Serine/threonine-protein phosphatase 7 long form homolog	28.947%	Swiss-Prot	weak database homology

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