LXL04_019230 | RubberDandelionOmics

Gene overview

LXL04_019230

Reference: OH-1004 Chr: Chr04 Coordinates: 26874741-26880442 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2835 bp · LXL04_019230|LXL04_019230|OH1004|cDNA

ATGGCCACTTCAGCTTCGATCTCAAGCAAACCGCGATTTAATCATTCCATCTTCCCCAGGGTTCACTCCTCCGACGTTATCTTTCCTGCCAGTGTAGCTGTGGATAGGAAGAGTTCGAGAAGAAATGTGTTTCGTGGAGTTGGAGTTGTGCGATCGTGCAGTAATAAAGTGGTAGCCATTGATGATCGGAAAGTGGAGTGTGTGGGTGATAGCACGAGAGAGAAAGGGAGGGTTTTAAAAGTCGGGTTAATTTGCGGAGG...

CDS

Download CDS FASTA

2835 bp · LXL04_019230|LXL04_019230|OH1004|CDS

ATGGCCACTTCAGCTTCGATCTCAAGCAAACCGCGATTTAATCATTCCATCTTCCCCAGGGTTCACTCCTCCGACGTTATCTTTCCTGCCAGTGTAGCTGTGGATAGGAAGAGTTCGAGAAGAAATGTGTTTCGTGGAGTTGGAGTTGTGCGATCGTGCAGTAATAAAGTGGTAGCCATTGATGATCGGAAAGTGGAGTGTGTGGGTGATAGCACGAGAGAGAAAGGGAGGGTTTTAAAAGTCGGGTTAATTTGCGGAGG...

Protein

Download Protein FASTA

944 aa · LXL04_019230|LXL04_019230|OH1004|PROTEIN

MATSASISSKPRFNHSIFPRVHSSDVIFPASVAVDRKSSRRNVFRGVGVVRSCSNKVVAIDDRKVECVGDSTREKGRVLKVGLICGGPSAERGISLNSARSVLDHIQGDDLHVSCYYIDPHLNAYAISSAQVYSNTPADFDFKLESLAQGFETLTEFAEHLAASVDIVFPVIHGRFGEDGGIQELLEKSNVPFVGTGSKECRTAFDKARLFYDASLELKRQGFITVPNFVLQGDELDESGLSRWFSNNKLDANSGKVVVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019230`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_019230`
Location	Chr04:26874741-26880442 (-)
Description	Similar to ddl: D-alanine--D-alanine ligase (Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019230` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0008360 regulation of cell shape Biological Process GO:0071555 cell wall organization Biological Process GO:0005829 cytosol Cellular Component GO:0005524 ATP binding Molecular Function GO:0008716 D-alanine-D-alanine ligase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	baf:BAPKO_0203 bafz:BafPKo_0196 bcl:ABC2907 cvi:CV_2472 kra:Krad_1363 oih:OB1306 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.808

Rank 1 · LXL04_019230 · OH-1004

Cytoplasm0.155

Rank 2 · LXL04_019230 · OH-1004

Mitochondrion0.135

Rank 3 · LXL04_019230 · OH-1004

Nucleus0.063

Rank 4 · LXL04_019230 · OH-1004

Peroxisome0.062

Rank 5 · LXL04_019230 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01820.28Dala_Dala_lig_N80-195 aa

PF07478.19Dala_Dala_lig_C256-461 aa

PF01820.28Dala_Dala_lig_N494-654 aa

PF07478.19Dala_Dala_lig_C807-915 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019230	`PF01820.28`	Dala_Dala_lig_N	80	195	7.6e-46	156.3
LXL04_019230	`PF07478.19`	Dala_Dala_lig_C	256	461	3.8e-34	118.7
LXL04_019230	`PF01820.28`	Dala_Dala_lig_N	494	654	7.6e-46	156.3
LXL04_019230	`PF07478.19`	Dala_Dala_lig_C	807	915	3.8e-34	118.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card