LXL04_019208 | RubberDandelionOmics

Gene overview

LXL04_019208

Reference: OH-1004 Chr: Chr04 Coordinates: 26620509-26623246 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1611 bp · LXL04_019208|LXL04_019208|OH1004|cDNA

ATGGATAGTGAAAAGGGAGACAAGTCTGCTGATGTCAACCAATCCACTGTAGATGTGAAGCCAAAGAAGAAGTCTGGTGGAAAGAAAGAGAAGCCTGCCAATGCCAACAAACCTACTGCAAATGCGTCTTCTAATAAGGGAAAGAAGAAAGAGACTGGTCTAGGTCTCACTAACACTAAAGATGGCAACTTTGGGGAATGGTATTCTGAGGTTGTTGTAAATGGCGAAATGATAGAATATTATGAAATATCTGGCTGTTA...

CDS

Download CDS FASTA

1611 bp · LXL04_019208|LXL04_019208|OH1004|CDS

ATGGATAGTGAAAAGGGAGACAAGTCTGCTGATGTCAACCAATCCACTGTAGATGTGAAGCCAAAGAAGAAGTCTGGTGGAAAGAAAGAGAAGCCTGCCAATGCCAACAAACCTACTGCAAATGCGTCTTCTAATAAGGGAAAGAAGAAAGAGACTGGTCTAGGTCTCACTAACACTAAAGATGGCAACTTTGGGGAATGGTATTCTGAGGTTGTTGTAAATGGCGAAATGATAGAATATTATGAAATATCTGGCTGTTA...

Protein

Download Protein FASTA

536 aa · LXL04_019208|LXL04_019208|OH1004|PROTEIN

MDSEKGDKSADVNQSTVDVKPKKKSGGKKEKPANANKPTANASSNKGKKKETGLGLTNTKDGNFGEWYSEVVVNGEMIEYYEISGCYILRPWTMSIWEMMQTYFDAEIKKMKIKTCYFPLFVSNTVLQKEKDHIEGFAPEVAWVTRSGDSDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRLYEEYLAVPVVKGKKSEMEKFAGGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019208`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019208

Location Chr04:26620509-26623246 (+)

Description Similar to At3g62120: Proline--tRNA ligase, cytoplasmic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62120`	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019208 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0006418 tRNA aminoacylation for protein translation Biological Process

GO:0006424 glutamyl-tRNA aminoacylation Biological Process

GO:0006433 prolyl-tRNA aminoacylation Biological Process

GO:0017148 negative regulation of translation Biological Process

GO:0032869 cellular response to insulin stimulus Biological Process

GO:0071346 cellular response to type II interferon Biological Process

GO:0140212 regulation of long-chain fatty acid import into cell Biological Process

GO:1901194 negative regulation of formation of translation preinitiation complex Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G62120

hsa:2058

mmu:107508

spo:2540431

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.818

Rank 1 · LXL04_019208 · OH-1004

Nucleus0.226

Rank 2 · LXL04_019208 · OH-1004

Mitochondrion0.089

Rank 3 · LXL04_019208 · OH-1004

Cell membrane0.065

Rank 4 · LXL04_019208 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_019208 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00587.31tRNA-synt_2b155-322 aa

PF03129.26HGTP_anticodon341-433 aa

PF09180.17ProRS-C_1463-536 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019208	`PF00587.31`	tRNA-synt_2b	155	322	3.7e-21	76.7
LXL04_019208	`PF03129.26`	HGTP_anticodon	341	433	1.5e-17	64.2
LXL04_019208	`PF09180.17`	ProRS-C_1	463	536	1.8e-24	86.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M1R2`	Arabidopsis thaliana	Proline--tRNA ligase, cytoplasmic	78.643%	Swiss-Prot	strong database homology

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