Gene Card
Gene overview
cDNA / CDS / Protein Sequences
906 bp · LXL04_019121|LXL04_019121|OH1004|cDNA
ATGGAAGGTCCGATCAACGGAGGAATGTTGTACCACGAGGTACAAGAGTCGAAGCTGTGTGCCGTCCATTGCGTGAACACGGTATTGCAGGGTCCTTTCTTCTCCGAGTTCGATTTGGCTGCTCTGGCCTCTGATCTTGATCGGACGGAGCACCAGATGATGTTGGAAGGATCCGCCGCTTCCGGCGGAGACGCTTTCCTGTCGGAGGAGTCACATAATGTCTCAATGGATGGCGATTTCAGTATACAGGTATTACAAAA...
906 bp · LXL04_019121|LXL04_019121|OH1004|CDS
ATGGAAGGTCCGATCAACGGAGGAATGTTGTACCACGAGGTACAAGAGTCGAAGCTGTGTGCCGTCCATTGCGTGAACACGGTATTGCAGGGTCCTTTCTTCTCCGAGTTCGATTTGGCTGCTCTGGCCTCTGATCTTGATCGGACGGAGCACCAGATGATGTTGGAAGGATCCGCCGCTTCCGGCGGAGACGCTTTCCTGTCGGAGGAGTCACATAATGTCTCAATGGATGGCGATTTCAGTATACAGGTATTACAAAA...
Protein
Download Protein FASTA301 aa · LXL04_019121|LXL04_019121|OH1004|PROTEIN
MEGPINGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRTEHQMMLEGSAASGGDAFLSEESHNVSMDGDFSIQVLQKALEVWDLQVIPLHSPVAEPAQVDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPEHLSRFYLSAYLDTLKGFGWSIFLVRGTFPKECPVTSGEASSGYGQWLLPEDAQRITKSCNNNNNNSSGDRREVAGRRSPVVVEDDDLSKAIAASLRENEVGVSGNDGDDDDDLE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_019121 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_019121 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:24072705-24075215 (-) | ||||||||||||
| Description | Similar to At3g54130: Ataxin-3 homolog | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000226 microtubule cytoskeleton organization Biological Process GO:0002181 cytoplasmic translation Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process GO:0009267 cellular response to starvation Biological Process GO:0010810 regulation of cell-substrate adhesion Biological Process GO:0016579 protein deubiquitination Biological Process GO:0030036 actin cytoskeleton organization Biological Process GO:0031669 cellular response to nutrient levels Biological Process | ||||||||||||
| KEGG gene cross-reference | ath:AT3G54130 dosa:Os01g0851400 hsa:4287 mmu:110616 rno:60331 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02099.24Josephin15-171 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_019121 | PF02099.24 | Josephin | 15 | 171 | 1.2e-54 | 185.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.