LXL04_019077 | RubberDandelionOmics

Gene overview

LXL04_019077

Reference: OH-1004 Chr: Chr04 Coordinates: 23192287-23194125 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1348 bp · LXL04_019077|LXL04_019077|OH1004|cDNA

ATGGGAACGAAGACCAAACAAACGATGAAAAACACCACTCCCGCCATTGAAGATACCATCACCAAATCCAAGAAGAGAACACGAAAGGTGTCCGAACCGAAACCGCAACCAGCGTTACCTGTCGGCGACATAGAAGATTTTCAATTTAGGGAAGACGAAGTTAAAGAAATCAGTACATCCTTGTTAAAATGGTACGATGTTAACCGGAGAGACCTTCCATGGCGGAGGATCAACGACTCCGATGATACTGACAGAGACAG...

CDS

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1344 bp · LXL04_019077|LXL04_019077|OH1004|CDS

ATGGGAACGAAGACCAAACAAACGATGAAAAACACCACTCCCGCCATTGAAGATACCATCACCAAATCCAAGAAGAGAACACGAAAGGTGTCCGAACCGAAACCGCAACCAGCGTTACCTGTCGGCGACATAGAAGATTTTCAATTTAGGGAAGACGAAGTTAAAGAAATCAGTACATCCTTGTTAAAATGGTACGATGTTAACCGGAGAGACCTTCCATGGCGGAGGATCAACGACTCCGATGATACTGACAGAGACAG...

Protein

Download Protein FASTA

447 aa · LXL04_019077|LXL04_019077|OH1004|PROTEIN

MGTKTKQTMKNTTPAIEDTITKSKKRTRKVSEPKPQPALPVGDIEDFQFREDEVKEISTSLLKWYDVNRRDLPWRRINDSDDTDRDRKAYAVWVSEIMLQQTRVQTVINYFNRWMEKWPTVEHLAQASIEEVNEIWAGLGYYRRARFLLEGAKSIVEEGGQFPRSLNDLRKVRGIGEYTAGAIASIAFNEAVPVVDGNVIRVIARLRTISANPKDKTTVKNIWRLAGQLVDLSRPGDFNQALMELGATLCTPLNPNCSSC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019077`
TK1151 ID	TkA05G016790
OH-1004 ID	LXL04_019077
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 86.801 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019077

Location Chr04:23192287-23194125 (-)

Description Similar to MYH: Adenine DNA glycosylase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12740`	Involved in oxidative DNA damage repair.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019077 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006284 base-excision repair Biological Process

GO:0006298 mismatch repair Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0045007 depurination Biological Process

GO:0060546 negative regulation of necroptotic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0000701 purine-specific mismatch base pair DNA N-glycosylase activity Molecular Function

GO:0019104 DNA N-glycosylase activity Molecular Function

GO:0032357 oxidized purine DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G12740

bsu:BSU08630

hsa:4595

mmu:70603

rno:170841

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.446

Rank 1 · LXL04_019077 · OH-1004

Cytoplasm0.371

Rank 2 · LXL04_019077 · OH-1004

Mitochondrion0.178

Rank 3 · LXL04_019077 · OH-1004

Plastid0.107

Rank 4 · LXL04_019077 · OH-1004

Cell membrane0.030

Rank 5 · LXL04_019077 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00730.32HhH-GPD94-225 aa

PF00633.30HHH159-186 aa

PF14815.13NUDIX_4313-429 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019077	`PF00730.32`	HhH-GPD	94	225	4.6e-25	88.8
LXL04_019077	`PF00633.30`	HHH	159	186	1.2e-06	28.7
LXL04_019077	`PF14815.13`	NUDIX_4	313	429	6.8e-14	52.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JRF4`	Arabidopsis thaliana	Adenine DNA glycosylase	57.452%	Swiss-Prot	strong database homology

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