LXL04_019037 | RubberDandelionOmics

Gene overview

LXL04_019037

Reference: OH-1004 Chr: Chr04 Coordinates: 22442645-22444984 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

990 bp · LXL04_019037|LXL04_019037|OH1004|cDNA

ATGGCGAATTGTAAAAAAGTTTCAAAACTGAACTCTATTGATCTCTCCTCTCCTCATATCCCTACCTCTGTATCCTTACTCAAACAGGCATGCATGGATTCCGGTTTCTTCTATGTCACAAATCATGGAATCTGTGAGGAATTTATGGATATAGTTTTTGCGGAAAGCAAGAAGTTCTTTGATCTTCCATTAGAAGAGAAAATGAAGCTTCTTAGAAATGAGAAACACCGAGGCTACACTCCTGCTCTTGATGAACTTCT...

CDS

Download CDS FASTA

984 bp · LXL04_019037|LXL04_019037|OH1004|CDS

ATGGCGAATTGTAAAAAAGTTTCAAAACTGAACTCTATTGATCTCTCCTCTCCTCATATCCCTACCTCTGTATCCTTACTCAAACAGGCATGCATGGATTCCGGTTTCTTCTATGTCACAAATCATGGAATCTGTGAGGAATTTATGGATATAGTTTTTGCGGAAAGCAAGAAGTTCTTTGATCTTCCATTAGAAGAGAAAATGAAGCTTCTTAGAAATGAGAAACACCGAGGCTACACTCCTGCTCTTGATGAACTTCT...

Protein

Download Protein FASTA

327 aa · LXL04_019037|LXL04_019037|OH1004|PROTEIN

MANCKKVSKLNSIDLSSPHIPTSVSLLKQACMDSGFFYVTNHGICEEFMDIVFAESKKFFDLPLEEKMKLLRNEKHRGYTPALDELLDPANQLHGDHKEGFYIGIELPEDDPEAQRTFYGSNLWPNSDILPGWRETMEKYHQLALEVVKKIARLIALSLNLDANFFEGPEMIGNPIAILRLLHYEGKVSDPSKGIYGAGAHSDYGFMTLLATDSVSGLQICKDKDAKPQVWESVEPLKGAFVVNLGDMLERWSNCIFRST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019037`
TK1151 ID	TkA05G012990
OH-1004 ID	LXL04_019037
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 90.520 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_019037`
Location	Chr04:22442645-22444984 (-)
Description	Similar to hxnY: 2-oxoglutarate-Fe(II) type oxidoreductase hxnY (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019037` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0044283 small molecule biosynthetic process Biological Process GO:1900602 endocrocin biosynthetic process Biological Process GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051213 dioxygenase activity Molecular Function
KEGG gene cross-reference	afm:AFUA_4G00230 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.774

Rank 1 · LXL04_019037 · OH-1004

Nucleus0.304

Rank 2 · LXL04_019037 · OH-1004

Peroxisome0.064

Rank 3 · LXL04_019037 · OH-1004

Mitochondrion0.056

Rank 4 · LXL04_019037 · OH-1004

Endoplasmic reticulum0.048

Rank 5 · LXL04_019037 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N11-126 aa

PF03171.272OG-FeII_Oxy180-279 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019037	`PF14226.13`	DIOX_N	11	126	4.1e-33	115.2
LXL04_019037	`PF03171.27`	2OG-FeII_Oxy	180	279	1.7e-22	80.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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