Gene Card
Gene overview
cDNA / CDS / Protein Sequences
486 bp · LXL04_018994|LXL04_018994|OH1004|cDNA
ATGGAATCGATAATGGCTAGGGCGTTGGAGTCCACTCTCAAATACTGGCTGAAATCATTCTCCAGAGATCAGTTCAAGTTACAAGGACGCACTGTACAGCTCTCCAATATAGATATAAGTGGCGATGCTTTACACGCAAGCCTTGGATTGCCGCCTGCTATAACCGTCACAACGGCGAAAGTAGGGAAGTTGGAAATCATGCTTCCTTATCTGAGTAATGTGCAACTGGAGCCAATTGTGGTGGTAATTGATAAACTTGA...
486 bp · LXL04_018994|LXL04_018994|OH1004|CDS
ATGGAATCGATAATGGCTAGGGCGTTGGAGTCCACTCTCAAATACTGGCTGAAATCATTCTCCAGAGATCAGTTCAAGTTACAAGGACGCACTGTACAGCTCTCCAATATAGATATAAGTGGCGATGCTTTACACGCAAGCCTTGGATTGCCGCCTGCTATAACCGTCACAACGGCGAAAGTAGGGAAGTTGGAAATCATGCTTCCTTATCTGAGTAATGTGCAACTGGAGCCAATTGTGGTGGTAATTGATAAACTTGA...
Protein
Download Protein FASTA161 aa · LXL04_018994|LXL04_018994|OH1004|PROTEIN
MESIMARALESTLKYWLKSFSRDQFKLQGRTVQLSNIDISGDALHASLGLPPAITVTTAKVGKLEIMLPYLSNVQLEPIVVVIDKLDAVLEENDDVDARRSTSSAQAPSTPSKSSSKSSSKGGGYGFAEKIADGMTLQIKTINLLLDTHGGGGGQHGEPTW
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018994 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018994 |
|---|---|
| Location | Chr04:21269971-21270802 (+) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0034498 early endosome to Golgi transport Biological Process GO:0120009 intermembrane lipid transfer Biological Process GO:0005769 early endosome Cellular Component GO:0005829 cytosol Cellular Component GO:0042803 protein homodimerization activity Molecular Function GO:0062069 GARP complex binding Molecular Function GO:0120013 lipid transfer activity Molecular Function |
| KEGG gene cross-reference | mmu:75089 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12624.15VPS13_N2-100 aaPF13329.14ATG2_CAD30-109 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018994 | PF12624.15 | VPS13_N | 2 | 100 | 2.1e-07 | 29.8 |
| LXL04_018994 | PF13329.14 | ATG2_CAD | 30 | 109 | 6e-06 | 25.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.