LXL04_018917 | RubberDandelionOmics

Gene overview

LXL04_018917

Reference: OH-1004 Chr: Chr04 Coordinates: 20011726-20013325 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1146 bp · LXL04_018917|LXL04_018917|OH1004|cDNA

ATGAAACCTTCCTCCATTGAAGCTTCTTTTAATCCCCATGGCCTTAAAGCTCTTATTGTGGATCATAATCCCACCTCCCTCTTCAATCTTTCCAAGATGCTTCAGTTTTACCATTATCAAGTAACATCATGTCCACGGCCAAGAGAAGCATTATCGTTGATCAGAAATGGTGTAACCAAGTTCGACATTGTGATAAACAGTGTAGACTTCTCATCAGATATGAACGGATTGCAGTTTCTTGACACCATTATTAGCGAAAC...

CDS

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1146 bp · LXL04_018917|LXL04_018917|OH1004|CDS

ATGAAACCTTCCTCCATTGAAGCTTCTTTTAATCCCCATGGCCTTAAAGCTCTTATTGTGGATCATAATCCCACCTCCCTCTTCAATCTTTCCAAGATGCTTCAGTTTTACCATTATCAAGTAACATCATGTCCACGGCCAAGAGAAGCATTATCGTTGATCAGAAATGGTGTAACCAAGTTCGACATTGTGATAAACAGTGTAGACTTCTCATCAGATATGAACGGATTGCAGTTTCTTGACACCATTATTAGCGAAAC...

Protein

Download Protein FASTA

381 aa · LXL04_018917|LXL04_018917|OH1004|PROTEIN

MKPSSIEASFNPHGLKALIVDHNPTSLFNLSKMLQFYHYQVTSCPRPREALSLIRNGVTKFDIVINSVDFSSDMNGLQFLDTIISETDLPVVSKSLISSSNLNLLKIYHIYLIFVDLDRSLVVVSEDERKDTIIECVKKGACAYLQKPVRMEDIQLLWQHVARKEILRLREMKQIDSVENGEPDSSNGGEDKEFCGSSDGDPVVVDRRRKVRDEEQDKVERKKQRLVWTEELHQQFLDAVEQLGNNNAVPKKVLELMNVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018917`
TK1151 ID	TkA05G004070
OH-1004 ID	LXL04_018917
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.300
Protein coverage (%)	TK1151 100.000 / OH-1004 93.176 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018917

Location Chr04:20011726-20013325 (+)

Description Similar to RR26: Two-component response regulator ORR26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16110`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.	The response regulator ARR2: a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis.2001 · DOI: 10.1007/s004380000400 Two-component circuitry in Arabidopsis cytokinin signal transduction.2001 · DOI: 10.1038/35096500 The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.2004 · DOI: 10.1038/sj.emboj.7600337 Cytokinin-mediated control of leaf longevity by AHK3 through phosphorylation of ARR2 in Arabidopsis.2006 · DOI: 10.1073/pnas.0505150103
`At1g67710`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.	In vivo and in vitro characterization of the ARR11 response regulator implicated in the His-to-Asp phosphorelay signal transduction in Arabidopsis thaliana.2003 · DOI: 10.1093/pcp/pcg014

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0904700`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release
`UniProt: A2XE31`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release
`Os03g0224200`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018917 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010150 leaf senescence Biological Process

GO:0048364 root development Biological Process

GO:0071368 cellular response to cytokinin stimulus Biological Process

KEGG gene cross-reference

ath:AT1G67710

ath:AT4G16110

dosa:Os01g0904700

dosa:Os03g0224200

osa:4325022

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · LXL04_018917 · OH-1004

Cytoplasm0.103

Rank 2 · LXL04_018917 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_018917 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_018917 · OH-1004

Plastid0.011

Rank 5 · LXL04_018917 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00072.31Response_reg18-92 aa

PF00249.38Myb_DNA-binding226-275 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018917	`PF00072.31`	Response_reg	18	92	1.2e-10	42.2
LXL04_018917	`PF00249.38`	Myb_DNA-binding	226	275	5.7e-11	43.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZWJ9`	Arabidopsis thaliana	Two-component response regulator ARR2	38.380%	Swiss-Prot	moderate database homology
`Q9FXD6`	Arabidopsis thaliana	Two-component response regulator ARR11	38.596%	Swiss-Prot	moderate database homology
`Q5N6V8`	Oryza sativa subsp. japonica	Two-component response regulator ORR26	35.775%	Swiss-Prot	moderate database homology
`A2XE31`	Oryza sativa subsp. indica	Two-component response regulator ORR21	37.943%	Swiss-Prot	moderate database homology
`Q8H7S7`	Oryza sativa subsp. japonica	Two-component response regulator ORR21	37.943%	Swiss-Prot	moderate database homology

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