Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1170 bp · LXL04_018913|LXL04_018913|OH1004|cDNA
ATGTCCAGAGAATCAAGCAGCAATGGGAATCCTGGTGATTCCTTAGCTATGTTAGCCGATATGCGAATTGATGATGAACAAGTGCCGGTCGGCTTAGGCTTTCTCGAACAACCAGAACATGAATGGTCTCTTCTTCGCCATTTATTCCCGAGCAAAGCCGGAGGAACTCCTGCTTGGTTAGATCCGATTAACTTGCCCTCTGGTAAATCATATCTGTGTGACATCTGTGGTGAACCTCTTCGATTCCTGCTTCAGGCTTA...
1170 bp · LXL04_018913|LXL04_018913|OH1004|CDS
ATGTCCAGAGAATCAAGCAGCAATGGGAATCCTGGTGATTCCTTAGCTATGTTAGCCGATATGCGAATTGATGATGAACAAGTGCCGGTCGGCTTAGGCTTTCTCGAACAACCAGAACATGAATGGTCTCTTCTTCGCCATTTATTCCCGAGCAAAGCCGGAGGAACTCCTGCTTGGTTAGATCCGATTAACTTGCCCTCTGGTAAATCATATCTGTGTGACATCTGTGGTGAACCTCTTCGATTCCTGCTTCAGGCTTA...
Protein
Download Protein FASTA389 aa · LXL04_018913|LXL04_018913|OH1004|PROTEIN
MSRESSSNGNPGDSLAMLADMRIDDEQVPVGLGFLEQPEHEWSLLRHLFPSKAGGTPAWLDPINLPSGKSYLCDICGEPLRFLLQAYAPLTDKESTFHRTLFVFICPSMSCLLQDQHEQWKHHPEKGARSIKVFRCQLPRKNQFYSSEAPKYNGSDKPLGTPAPLCSWCGTWKGDKICTNCKTARYCSKTHQTSHWNSAHKTQCRSLEGSTDIPKAAGNITWPEYEIINEDESEFKLESSNSNVPEYGNELLGEYESEFD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018913 |
|---|---|
| TK1151 ID | TkA05G004000 |
| OH-1004 ID | LXL04_018913 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 83.600 |
| Protein coverage (%) | TK1151 90.625 / OH-1004 37.018Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018913 |
|---|---|
| Location | Chr04:19973979-19975969 (-) |
| Description | Similar to Pdcd2: Programmed cell death protein 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0012501 programmed cell death Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0016020 membrane Cellular Component GO:0070062 extracellular exosome Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0019899 enzyme binding Molecular Function GO:0140597 protein carrier chaperone Molecular Function |
| KEGG gene cross-reference | bta:512079 hsa:5134 hsa:84306 mmu:18567 rno:58934 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF30657.1PDCD2_N30-151 aaPF01753.25zf-MYND166-204 aaPF04194.19PDCD2_C281-383 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018913 | PF30657.1 | PDCD2_N | 30 | 151 | 8.2e-45 | 152.2 |
| LXL04_018913 | PF01753.25 | zf-MYND | 166 | 204 | 3.1e-08 | 34.2 |
| LXL04_018913 | PF04194.19 | PDCD2_C | 281 | 383 | 3.4e-31 | 108.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.