LXL04_018907 | RubberDandelionOmics

Gene overview

LXL04_018907

Reference: OH-1004 Chr: Chr04 Coordinates: 19941127-19942131 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_018907|LXL04_018907|OH1004|cDNA

ATGAAGTGTCTTAAACCGACGTCGTCACGTCCCTGCTCTACTTTGCTACTTAAACacccatctctctctctctcaacaTTCACATCTGTCCTTTCTACAAAACTTGTTTACTTCTCTCAAAATCAATTGCAATTTGCAACAGCGATCATGTGTGGTGGTGCTATTATCGCCGATCTCATACCTCGGTCCAGTCGCCTCAACTCCGCCGACGTCTGGCCCTTCTCCACCGTCTACACTAAACCCAGCCCTTTCGAATCAGA...

CDS

Download CDS FASTA

876 bp · LXL04_018907|LXL04_018907|OH1004|CDS

ATGAAGTGTCTTAAACCGACGTCGTCACGTCCCTGCTCTACTTTGCTACTTAAACACCCATCTCTCTCTCTCTCAACATTCACATCTGTCCTTTCTACAAAACTTGTTTACTTCTCTCAAAATCAATTGCAATTTGCAACAGCGATCATGTGTGGTGGTGCTATTATCGCCGATCTCATACCTCGGTCCAGTCGCCTCAACTCCGCCGACGTCTGGCCCTTCTCCACCGTCTACACTAAACCCAGCCCTTTCGAATCAGA...

Protein

Download Protein FASTA

291 aa · LXL04_018907|LXL04_018907|OH1004|PROTEIN

MKCLKPTSSRPCSTLLLKHPSLSLSTFTSVLSTKLVYFSQNQLQFATAIMCGGAIIADLIPRSSRLNSADVWPFSTVYTKPSPFESEFNHFVEETSRVHKRAPTSSGCELEDNMSKRKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGSKAKVNFPNEGDSHDQFYGDHNKSAAVLRNGSNLGLSNSERNEFVPAMVKEKRTEKVAEAVQEVNEVQKLSEELMAYESYMKFYEMP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018907`
TK1151 ID	TkA05G003910
OH-1004 ID	LXL04_018907
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.900
Protein coverage (%)	TK1151 58.904 / OH-1004 44.330 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018907

Location Chr04:19941127-19942131 (+)

Description Similar to ERF071: Ethylene-responsive transcription factor ERF071

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47520`	Transcriptional activator that binds specifically to the cis- acting element GCC box 5'-AGCCGCC-3', or to the CRT/DRE element 5'- [AG]CCGAC-3'.	HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana.2010 · DOI: 10.1111/j.1365-313x.2010.04149.x The hypoxia responsive transcription factor genes ERF71/HRE2 and ERF73/HRE1 of Arabidopsis are differentially regulated by ethylene.2011 · DOI: 10.1111/j.1399-3054.2011.01486.x AtERF71/HRE2 transcription factor mediates osmotic stress response as well as hypoxia response in Arabidopsis.2011 · DOI: 10.1016/j.bbrc.2011.09.039 Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.2011 · DOI: 10.1038/nature10534 Arabidopsis AtERF71/HRE2 functions as transcriptional activator via cis-acting GCC box or DRE/CRT element and is involved in root development through regulation of root cell expansion.2015 · DOI: 10.1007/s00299-014-1701-9 Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.2019 · DOI: 10.1111/plb.12873 The possible roles of AtERF71 in the defense response against the Fusarium graminearum .2018 · DOI: 10.5511/plantbiotechnology.18.0501b
`At1g72360`	Transcriptional activator involved in the hypoxic stress response.	HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana.2010 · DOI: 10.1111/j.1365-313x.2010.04149.x The AP2/ERF transcription factor AtERF73/HRE1 modulates ethylene responses during hypoxia in Arabidopsis.2011 · DOI: 10.1104/pp.111.172486 The hypoxia responsive transcription factor genes ERF71/HRE2 and ERF73/HRE1 of Arabidopsis are differentially regulated by ethylene.2011 · DOI: 10.1111/j.1399-3054.2011.01486.x Arabidopsis HRE1α, a splicing variant of AtERF73/HRE1, functions as a nuclear transcription activator in hypoxia response and root development.2014 · DOI: 10.1007/s00299-014-1613-8 Two Alternative Splicing Variants of AtERF73/HRE1, HRE1α and HRE1β, Have Differential Transactivation Activities in Arabidopsis.2020 · DOI: 10.3390/ijms21196984
`At3g16770`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g51190`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0782700`	Probable transcriptional activator that may be involved in defense signaling pathway.	BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor.2003 · DOI: 10.1104/pp.103.023176

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018907 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009408 response to heat Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010286 heat acclimation Biological Process

GO:0012501 programmed cell death Biological Process

KEGG gene cross-reference

ath:AT1G72360

ath:AT2G47520

ath:AT3G16770

ath:AT5G51190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.811

Rank 1 · LXL04_018907 · OH-1004

Plastid0.141

Rank 2 · LXL04_018907 · OH-1004

Cytoplasm0.068

Rank 3 · LXL04_018907 · OH-1004

Cell membrane0.037

Rank 4 · LXL04_018907 · OH-1004

Mitochondrion0.036

Rank 5 · LXL04_018907 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP2125-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018907	`PF00847.27`	AP2	125	173	1.5e-13	51.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22259`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF071	43.515%	Swiss-Prot	moderate database homology
`Q8H0T5`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF073	35.424%	Swiss-Prot	moderate database homology
`P42736`	Arabidopsis thaliana	Ethylene-responsive transcription factor RAP2-3	51.034%	Swiss-Prot	weak database homology
`Q8VY90`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF105	47.458%	Swiss-Prot	weak database homology
`Q6K7E6`	Oryza sativa subsp. japonica	Ethylene-responsive transcription factor 1	90.625%	Swiss-Prot	weak database homology

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