LXL04_018838 | RubberDandelionOmics

Gene overview

LXL04_018838

Reference: OH-1004 Chr: Chr04 Coordinates: 19003272-19015671 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4629 bp · LXL04_018838|LXL04_018838|OH1004|cDNA

ATGGCTACAGTATCAGATATTACGGCATCCGCGACCATTAATGGTCTATCTGCAATACTATTTCTTGTGGCATTTGGGATCTTACGTCTTCAACCCATGAACGATCGAgtttacttttcaaaatggTATCTCAAAGGCATTCGAGAAAATCCAAGCACTTTGGGACCTTTTGTCAAGAAATTTTTCAATCTAGATTATAGAATGTACTTAAGATTTTTAAACTGGGTGCCTGCCGCATTAAAAATGCCAGAATCCGAACT...

CDS

Download CDS FASTA

4629 bp · LXL04_018838|LXL04_018838|OH1004|CDS

ATGGCTACAGTATCAGATATTACGGCATCCGCGACCATTAATGGTCTATCTGCAATACTATTTCTTGTGGCATTTGGGATCTTACGTCTTCAACCCATGAACGATCGAGTTTACTTTTCAAAATGGTATCTCAAAGGCATTCGAGAAAATCCAAGCACTTTGGGACCTTTTGTCAAGAAATTTTTCAATCTAGATTATAGAATGTACTTAAGATTTTTAAACTGGGTGCCTGCCGCATTAAAAATGCCAGAATCCGAACT...

Protein

Download Protein FASTA

1542 aa · LXL04_018838|LXL04_018838|OH1004|PROTEIN

MATVSDITASATINGLSAILFLVAFGILRLQPMNDRVYFSKWYLKGIRENPSTLGPFVKKFFNLDYRMYLRFLNWVPAALKMPESELIDHAGLDSAVYIRIYLLGLKIFVPIAFVAFAILLPVNYTDKNFEIVITKVEDLTFSQIDKFSISNVPSGSKRLFVHIFMAYVFTFWTCYVLYKEYKIVTDMRLHFLATENRRVDQYTVIVRNIPPDVDESVSENVEHFFRVNHPDHYLLHQVVYNANKLAKIVHHKRDLRNRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018838`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018838

Location Chr04:19003272-19015671 (+)

Description Similar to At4g02900: CSC1-like protein At4g02900

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02900`	Calcium-permeable channel involved in plant stomatal immunity.	No verified direct reference in this release
`At3g21620`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g11960`	Calcium-permeable channel that plays a key role in plant stomatal immunity.	The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity.2020 · DOI: 10.1038/s41586-020-2702-1
`At4g22120`	Acts as an osmosensitive calcium-permeable cation channel.	OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels.2018 · DOI: 10.7554/elife.41844 Structure-guided mutagenesis of OSCAs reveals differential activation to mechanical stimuli.2024 · DOI: 10.7554/elife.93147
`At4g04340`	May act as a hyperosmolarity-gated nonselective cation channel permeable to Ca²⁺.	OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis.2014 · DOI: 10.1038/nature13593 OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels.2018 · DOI: 10.7554/elife.41844

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018838 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010118 stomatal movement Biological Process

GO:0045087 innate immune response Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005227 calcium-activated cation channel activity Molecular Function

GO:0005262 calcium channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G11960

ath:AT3G21620

ath:AT4G02900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.823

Rank 1 · LXL04_018838 · OH-1004

Cytoplasm0.120

Rank 2 · LXL04_018838 · OH-1004

Endoplasmic reticulum0.078

Rank 3 · LXL04_018838 · OH-1004

Lysosome / Vacuole0.040

Rank 4 · LXL04_018838 · OH-1004

Mitochondrion0.037

Rank 5 · LXL04_018838 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13967.12RSN1_TM7-181 aa

PF14703.13PHM7_cyt202-364 aa

PF02714.21RSN1_7TM376-647 aa

PF13967.12RSN1_TM783-957 aa

PF14703.13PHM7_cyt978-1140 aa

PF02714.21RSN1_7TM1151-1423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018838	`PF13967.12`	RSN1_TM	7	181	3.7e-78	261.3
LXL04_018838	`PF14703.13`	PHM7_cyt	202	364	3e-92	308.3
LXL04_018838	`PF02714.21`	RSN1_7TM	376	647	2e-166	552.9
LXL04_018838	`PF13967.12`	RSN1_TM	783	957	3.7e-78	261.3
LXL04_018838	`PF14703.13`	PHM7_cyt	978	1140	3e-92	308.3
LXL04_018838	`PF02714.21`	RSN1_7TM	1151	1423	2e-166	552.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY14`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.7	69.312%	Swiss-Prot	weak database homology
`Q9LVE4`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.5	65.912%	Swiss-Prot	weak database homology
`B5TYT3`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.3	64.940%	Swiss-Prot	weak database homology
`Q5XEZ5`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.2	64.581%	Swiss-Prot	weak database homology
`Q9XEA1`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.1	64.613%	Swiss-Prot	weak database homology

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