LXL04_018800 | RubberDandelionOmics

Gene overview

LXL04_018800

Reference: OH-1004 Chr: Chr04 Coordinates: 18431899-18434888 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1320 bp · LXL04_018800|LXL04_018800|OH1004|cDNA

ATGGAGGATGATGATTCTACGATTGCGTCGGAAGCCAACAATAAAGAATCCATGGAAGTGGAAGTTGCTCCGGCTCTCATCTCCGTTCATCCTGCTCAGGACTCCGTCGCTGTCGCCGTTGGCTCTGAGCTTCGTGTATTTAATCTCCGAGAAGGTTGCCCTGTAACTTTAGGAGCTGACTCAAATGAAGCATGTCATCATAAGGAATCTATCAGAGCAATTCGCTATGGTGCAAAAGGTAAACTCTTCGTGTCTGCTGG...

CDS

Download CDS FASTA

1320 bp · LXL04_018800|LXL04_018800|OH1004|CDS

ATGGAGGATGATGATTCTACGATTGCGTCGGAAGCCAACAATAAAGAATCCATGGAAGTGGAAGTTGCTCCGGCTCTCATCTCCGTTCATCCTGCTCAGGACTCCGTCGCTGTCGCCGTTGGCTCTGAGCTTCGTGTATTTAATCTCCGAGAAGGTTGCCCTGTAACTTTAGGAGCTGACTCAAATGAAGCATGTCATCATAAGGAATCTATCAGAGCAATTCGCTATGGTGCAAAAGGTAAACTCTTCGTGTCTGCTGG...

Protein

Download Protein FASTA

439 aa · LXL04_018800|LXL04_018800|OH1004|PROTEIN

MEDDDSTIASEANNKESMEVEVAPALISVHPAQDSVAVAVGSELRVFNLREGCPVTLGADSNEACHHKESIRAIRYGAKGKLFVSAGDDKVVKIWATDSWRCIYSVPTEKKVSAVAISDNGQFVCYADKFGVVWVVELDELNENQTPVQKKGSPLLAHYCSIITSLEFSPDGQFIVTADRDFKIRVSMFPKKPIDGAHEIQSYCLGHTEFVSSLAFIYNQEFPQGYLVSGSGDSTVRLWDFTSGLLLHTCEVGSEVGEQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018800`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_018800`
Location	Chr04:18431899-18434888 (+)
Description	Similar to wdr4: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018800` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006400 tRNA modification Biological Process GO:0006974 DNA damage response Biological Process GO:0106004 tRNA (guanine-N7)-methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component GO:0005829 cytosol Cellular Component GO:0043527 tRNA methyltransferase complex Cellular Component GO:0106143 tRNA (m7G46) methyltransferase complex Cellular Component GO:0008047 enzyme activator activity Molecular Function
KEGG gene cross-reference	bta:508051 ddi:DDB_G0281061 xla:380200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.590

Rank 1 · LXL04_018800 · OH-1004

Cytoplasm0.449

Rank 2 · LXL04_018800 · OH-1004

Mitochondrion0.062

Rank 3 · LXL04_018800 · OH-1004

Cell membrane0.052

Rank 4 · LXL04_018800 · OH-1004

Endoplasmic reticulum0.050

Rank 5 · LXL04_018800 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23098.2Beta-prop_NOL10_N11-125 aa

PF24796.2WDR5517-125 aa

PF23381.2Beta-prop_IFT122_1st30-258 aa

PF24807.2WD40_CDC20-Fz33-257 aa

PF25174.2Beta-prop_THOC343-251 aa

PF24817.2WD40_WDHD1_1st43-138 aa

PF25168.2Beta-prop_WDR36-Utp21_2nd43-191 aa

PF24814.2WD40_Prp1965-255 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018800	`PF23098.2`	Beta-prop_NOL10_N	11	125	7.8e-06	26.0
LXL04_018800	`PF24796.2`	WDR55	17	125	1.3e-10	41.5
LXL04_018800	`PF23381.2`	Beta-prop_IFT122_1st	30	258	1.4e-20	74.5
LXL04_018800	`PF24807.2`	WD40_CDC20-Fz	33	257	4e-14	53.3
LXL04_018800	`PF25174.2`	Beta-prop_THOC3	43	251	3e-22	79.6
LXL04_018800	`PF24817.2`	WD40_WDHD1_1st	43	138	1.4e-20	74.4
LXL04_018800	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	43	191	2.1e-11	44.4
LXL04_018800	`PF24814.2`	WD40_Prp19	65	255	7.8e-15	55.4
LXL04_018800	`PF25172.2`	Beta-prop_WDR3_2nd	65	127	1.8e-11	44.6
LXL04_018800	`PF30361.1`	TRM82_WD	66	147	5e-34	118.6
LXL04_018800	`PF24817.2`	WD40_WDHD1_1st	66	285	1.4e-20	74.4
LXL04_018800	`PF25175.2`	Beta-prop_WDR5	66	127	6e-19	69.1
LXL04_018800	`PF25173.2`	Beta-prop_WDR3_1st	66	125	2.2e-18	67.3
LXL04_018800	`PF25391.2`	WD40_Gbeta	67	248	7.2e-06	25.9
LXL04_018800	`PF23414.2`	Beta-prop_EML_2	79	219	7.1e-16	59.1
LXL04_018800	`PF25047.1`	Beta-prop_TEP1_2nd	81	245	3.6e-10	40.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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