Gene Card
Gene overview
cDNA / CDS / Protein Sequences
10623 bp · LXL04_018782|LXL04_018782|OH1004|cDNA
ATGAAATGGGTATCATTGCTTAAAGACATCAAAGACAAGGTAGGTTTCTCAGCGCCTACATCAGCTGCATCTTCTTCCGCCCCCTATAGTGAGCAGAATAGTAACAATGCCACTTCTTCAAGCTACGATGACCCCTTCTCAAGAGAAAGACATGAACTGGAATTGGATTTCAAGAGATGTTGGGATGACTTCCGAACATCAACTTCAGAGATGGAGAAGGAAAAAGCCTTGAATGTCACTATTGATGTCTTTTGTAGATT...
10623 bp · LXL04_018782|LXL04_018782|OH1004|CDS
ATGAAATGGGTATCATTGCTTAAAGACATCAAAGACAAGGTAGGTTTCTCAGCGCCTACATCAGCTGCATCTTCTTCCGCCCCCTATAGTGAGCAGAATAGTAACAATGCCACTTCTTCAAGCTACGATGACCCCTTCTCAAGAGAAAGACATGAACTGGAATTGGATTTCAAGAGATGTTGGGATGACTTCCGAACATCAACTTCAGAGATGGAGAAGGAAAAAGCCTTGAATGTCACTATTGATGTCTTTTGTAGATT...
Protein
Download Protein FASTA3540 aa · LXL04_018782|LXL04_018782|OH1004|PROTEIN
MKWVSLLKDIKDKVGFSAPTSAASSSAPYSEQNSNNATSSSYDDPFSRERHELELDFKRCWDDFRTSTSEMEKEKALNVTIDVFCRLVKQHPNIAQLNTLLVETHIFSFVVGRAFVSDIERLKVSSKTRSLEIESVISFFSEDTQDEILYGSNLLLAVGFLVSGPIDKQSLLDSGIMCCLVHILDALLASDGGSVSVNVKPEVEEDSEVTENVAPDRRFEVEGSILHIMKALASHHAAAQGLIEDNSLKQLFEVVANASL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018782 |
|---|---|
| TK1151 ID | TkA08G082760 |
| OH-1004 ID | LXL04_018782 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018782 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:18154020-18171380 (-) | |||||||||
| Description | Similar to SPI: Protein SPIRRIG | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0007033 vacuole organization Biological Process GO:0009825 multidimensional cell growth Biological Process GO:0010090 trichome morphogenesis Biological Process GO:0033962 P-body assembly Biological Process GO:0035973 aggrephagy Biological Process GO:0071472 cellular response to salt stress Biological Process GO:0080001 mucilage extrusion from seed coat Biological Process GO:1902892 positive regulation of root hair elongation Biological Process GO:1903335 regulation of vacuolar transport Biological Process GO:1904580 regulation of intracellular mRNA localization Biological Process GO:0000421 autophagosome membrane Cellular Component GO:0000932 P-body Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G03060 ath:AT4G02660 hsa:23001 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13385.14Laminin_G_31009-1178 aaPF14844.13PH_BEACH2836-2895 aaPF02138.24Beach2926-3205 aaPF25173.2Beta-prop_WDR3_1st3258-3411 aaPF25174.2Beta-prop_THOC33259-3422 aaPF24814.2WD40_Prp193259-3413 aaPF24807.2WD40_CDC20-Fz3260-3400 aaPF20426.5NBCH_WD403264-3423 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018782 | PF13385.14 | Laminin_G_3 | 1009 | 1178 | 5.7e-06 | 27.3 |
| LXL04_018782 | PF14844.13 | PH_BEACH | 2836 | 2895 | 4.6e-10 | 40.3 |
| LXL04_018782 | PF02138.24 | Beach | 2926 | 3205 | 3.8e-119 | 397.9 |
| LXL04_018782 | PF25173.2 | Beta-prop_WDR3_1st | 3258 | 3411 | 1.5e-15 | 58.1 |
| LXL04_018782 | PF25174.2 | Beta-prop_THOC3 | 3259 | 3422 | 2.7e-12 | 47.0 |
| LXL04_018782 | PF24814.2 | WD40_Prp19 | 3259 | 3413 | 3.2e-10 | 40.3 |
| LXL04_018782 | PF24807.2 | WD40_CDC20-Fz | 3260 | 3400 | 9.1e-09 | 35.7 |
| LXL04_018782 | PF20426.5 | NBCH_WD40 | 3264 | 3423 | 1.2e-10 | 41.5 |
| LXL04_018782 | PF23409.2 | Beta-prop_EML | 3271 | 3371 | 8.5e-10 | 39.3 |
| LXL04_018782 | PF24796.2 | WDR55 | 3271 | 3461 | 2.3e-07 | 30.9 |
| LXL04_018782 | PF25047.1 | Beta-prop_TEP1_2nd | 3282 | 3424 | 9.3e-10 | 38.8 |
| LXL04_018782 | PF25175.2 | Beta-prop_WDR5 | 3287 | 3424 | 1.9e-15 | 57.7 |
| LXL04_018782 | PF00400.39 | WD40 | 3291 | 3318 | 1e-14 | 55.0 |
| LXL04_018782 | PF23381.2 | Beta-prop_IFT122_1st | 3333 | 3462 | 5.9e-18 | 65.9 |
| LXL04_018782 | PF00400.39 | WD40 | 3334 | 3370 | 1e-14 | 55.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.