Gene Card
Gene overview
cDNA / CDS / Protein Sequences
846 bp · LXL04_018764|LXL04_018764|OH1004|cDNA
ATGCTCAGACATCGCTGTATAATGTCATACCCGCGAATATTACAATCGCCGAACTGTACTCGCCGGAACCCTAAACTAATCGAAGTAGAGATGGCAACTGAAGAACCAATAGTCGCAACGGAGCCGGAGACGAAGGGAACTACCAAGGCCAAAGGAGCCGCAAAGGCGAAGAAAGTTAAGAAAACATCAGCTCCGAAGAAGGATGCTCCTTCGCATCCTCAATACATTGAGATGATTAAGGACGCCATTGTTACGTTGAA...
846 bp · LXL04_018764|LXL04_018764|OH1004|CDS
ATGCTCAGACATCGCTGTATAATGTCATACCCGCGAATATTACAATCGCCGAACTGTACTCGCCGGAACCCTAAACTAATCGAAGTAGAGATGGCAACTGAAGAACCAATAGTCGCAACGGAGCCGGAGACGAAGGGAACTACCAAGGCCAAAGGAGCCGCAAAGGCGAAGAAAGTTAAGAAAACATCAGCTCCGAAGAAGGATGCTCCTTCGCATCCTCAATACATTGAGATGATTAAGGACGCCATTGTTACGTTGAA...
Protein
Download Protein FASTA281 aa · LXL04_018764|LXL04_018764|OH1004|PROTEIN
MLRHRCIMSYPRILQSPNCTRRNPKLIEVEMATEEPIVATEPETKGTTKAKGAAKAKKVKKTSAPKKDAPSHPQYIEMIKDAIVTLKERNGSSVQAIAKFIEEKYKNLPANFKKVLYTRLKKEAAAGKLVKVKYSFKLPPKNAPVRTDSSAPAKKPKAAAKKAAAKPKAAAKSKSPAKPKAKAPAAKTKTAPAPKGKAADKRKAAPAPKAKPAAKAKPAAKSKPAAKPKTPTKPAAKSAKTSTRSTPGRTAKAPKPAVKK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018764 |
|---|---|
| TK1151 ID | TkA08G081950 |
| OH-1004 ID | LXL04_018764 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 89.324Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018764 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:17855234-17856178 (-) | |||||||||
| Description | Similar to At2g30620: Histone H1.2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006334 nucleosome assembly Biological Process GO:0030261 chromosome condensation Biological Process GO:0045910 negative regulation of DNA recombination Biological Process GO:0000786 nucleosome Cellular Component GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0003690 double-stranded DNA binding Molecular Function GO:0030527 structural constituent of chromatin Molecular Function GO:0031492 nucleosomal DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G06760 ath:AT2G30620 sly:101248710 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00538.26Linker_histone72-133 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018764 | PF00538.26 | Linker_histone | 72 | 133 | 1.7e-19 | 70.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.