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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018648
Reference: OH-1004 Chr: Chr04 Coordinates: 16299512-16300648 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1137 bp · LXL04_018648|LXL04_018648|OH1004|cDNA

ATGGCGAGACCAATCTTACAGCGACGCTCTCTCGCCTCCACTCTAACCGCATTTCTCAATCGCCGATCAATCTCCACCGTCGCCGTTGATGCACCCAGAAACCCCATTACCTCGATACCTCTGCCATCCCCACCACCACCACAAATCTCCAACCTGAGAACGAGAACTCCACTAGAGAAGCAATTCGAGACATGGCTCGAAAAGCTCAAACCCGGATTCACCCCATACGACGTGGACGAAGCATTACGTGCTCAATCCGA...

CDS

Download CDS FASTA

1137 bp · LXL04_018648|LXL04_018648|OH1004|CDS

ATGGCGAGACCAATCTTACAGCGACGCTCTCTCGCCTCCACTCTAACCGCATTTCTCAATCGCCGATCAATCTCCACCGTCGCCGTTGATGCACCCAGAAACCCCATTACCTCGATACCTCTGCCATCCCCACCACCACCACAAATCTCCAACCTGAGAACGAGAACTCCACTAGAGAAGCAATTCGAGACATGGCTCGAAAAGCTCAAACCCGGATTCACCCCATACGACGTGGACGAAGCATTACGTGCTCAATCCGA...

Protein

Download Protein FASTA

378 aa · LXL04_018648|LXL04_018648|OH1004|PROTEIN

MARPILQRRSLASTLTAFLNRRSISTVAVDAPRNPITSIPLPSPPPPQISNLRTRTPLEKQFETWLEKLKPGFTPYDVDEALRAQSDADLAFDIFRWTGQQRGYKHNSTTYLTMVQIAVSGKRYYHAETLVEEIVAGACSGSVPLYNSVIKFCCGRKFLFNRAFDVYKKMLNDEDTKPNLETYKLLLDSLLRRFNNLNVSHVYLRGVKSLSKQMKASGVIPDTFAHNMIIKAHAKCHELEQAIRVFREMALYGNQPNLYT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018648
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018648
LocationChr04:16299512-16300648 (-)
DescriptionSimilar to At3g25210: Pentatricopeptide repeat-containing protein At3g25210, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25210 Pentatricopeptide repeat-containing protein At3g25210, mitochondrial. No verified direct reference in this release
At2g27800 Pentatricopeptide repeat-containing protein At2g27800, mitochondrial. No verified direct reference in this release
At1g03560 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial. No verified direct reference in this release
At2g36240 Pentatricopeptide repeat-containing protein At2g36240. No verified direct reference in this release
At1g71060 Pentatricopeptide repeat-containing protein At1g71060, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018648 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G03560
ath:AT2G27800
ath:AT3G25210
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.807
Rank 1 · LXL04_018648 · OH-1004
Plastid0.108
Rank 2 · LXL04_018648 · OH-1004
Nucleus0.062
Rank 3 · LXL04_018648 · OH-1004
Cytoplasm0.030
Rank 4 · LXL04_018648 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_018648 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2145-191 aa
PF17177.11PPR_long154-297 aa
PF29070.1MSC6_N160-246 aa
PF13812.13PPR_3210-266 aa
PF12854.14PPR_1218-249 aa
PF13041.13PPR_2221-269 aa
PF12854.14PPR_1255-285 aa
PF01535.27PPR259-287 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018648PF13041.13PPR_21451913.4e-39133.4
LXL04_018648PF17177.11PPR_long1542971.6e-1764.3
LXL04_018648PF29070.1MSC6_N1602462.6e-0627.5
LXL04_018648PF13812.13PPR_32102664.7e-1659.3
LXL04_018648PF12854.14PPR_12182492.6e-2691.7
LXL04_018648PF13041.13PPR_22212693.4e-39133.4
LXL04_018648PF12854.14PPR_12552852.6e-2691.7
LXL04_018648PF01535.27PPR2592871.1e-1969.9
LXL04_018648PF13041.13PPR_22643043.4e-39133.4
LXL04_018648PF17177.11PPR_long2753721.6e-1764.3
LXL04_018648PF13041.13PPR_22953403.4e-39133.4
LXL04_018648PF12854.14PPR_13243532.6e-2691.7
LXL04_018648PF13041.13PPR_23263733.4e-39133.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSF5Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g25210, mitochondrial62.918%Swiss-Protstrong database homology
Q9ZUY1Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g27800, mitochondrial31.861%Swiss-Protmoderate database homology
Q9LR67Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g03560, mitochondrial24.603%Swiss-Protweak database homology
Q9SJN2Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g3624026.989%Swiss-Protweak database homology
Q9C9A2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g71060, mitochondrial24.465%Swiss-Protweak database homology

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