Gene Card
Gene overview
cDNA / CDS / Protein Sequences
798 bp · LXL04_018607|LXL04_018607|OH1004|cDNA
ATGGCTACAGTTATCTCCGGCGACAATCAATCAAAATCAAGAATCCAGCGAGATACTATCAAGAAAGCTTTGATCTCATTACTCAAATGGAAAAAGAAGCAAATCGCCGATCAGAAAGAGCCGATTTCCGGCAACGTCGATGATTTCTTCTACCTTCTCTTAACTCTCAAGAAAATCCCACACAAAGACTTCACCAAAGCTCCTAAAAAGATACCCCTTCCGCATTCTCTACACCCACCGCCGGAATTCCTTCGGAGTTG...
798 bp · LXL04_018607|LXL04_018607|OH1004|CDS
ATGGCTACAGTTATCTCCGGCGACAATCAATCAAAATCAAGAATCCAGCGAGATACTATCAAGAAAGCTTTGATCTCATTACTCAAATGGAAAAAGAAGCAAATCGCCGATCAGAAAGAGCCGATTTCCGGCAACGTCGATGATTTCTTCTACCTTCTCTTAACTCTCAAGAAAATCCCACACAAAGACTTCACCAAAGCTCCTAAAAAGATACCCCTTCCGCATTCTCTACACCCACCGCCGGAATTCCTTCGGAGTTG...
Protein
Download Protein FASTA265 aa · LXL04_018607|LXL04_018607|OH1004|PROTEIN
MATVISGDNQSKSRIQRDTIKKALISLLKWKKKQIADQKEPISGNVDDFFYLLLTLKKIPHKDFTKAPKKIPLPHSLHPPPEFLRSCLIIDDRPKPNSQKLTFEYADKKIKSLGIPISKILKLSKLKSDYRTFDSKTELLNSFDVFLADRRVIDMLPEILGKVFYKNKRKIPVPVELRRDGDWKEEIEMGFCCSLLWLSKGTCSVVKIGKFGGMEVEKMVDNVVAAIGGVVEVAPKKWVGVKSFHLKFFDSLALPIYQKK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018607 |
|---|---|
| TK1151 ID | TkA08G072060 |
| OH-1004 ID | LXL04_018607 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018607 |
|---|---|
| Location | Chr04:15560327-15561124 (+) |
| Description | Similar to RSL1D1: Ribosomal L1 domain-containing protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0030490 maturation of SSU-rRNA Biological Process GO:0032880 regulation of protein localization Biological Process GO:1902626 assembly of large subunit precursor of preribosome Biological Process GO:2000772 regulation of cellular senescence Biological Process GO:0005694 chromosome Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0005929 cilium Cellular Component GO:0016020 membrane Cellular Component GO:0030684 preribosome Cellular Component GO:0003723 RNA binding Molecular Function GO:0003730 mRNA 3'-UTR binding Molecular Function |
| KEGG gene cross-reference | hsa:26156 mmu:66409 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00687.27Ribosomal_L129-248 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018607 | PF00687.27 | Ribosomal_L1 | 29 | 248 | 1.9e-38 | 132.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.