LXL04_018574 | RubberDandelionOmics

Gene overview

LXL04_018574

Reference: OH-1004 Chr: Chr04 Coordinates: 14913947-14915787 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_018574|LXL04_018574|OH1004|cDNA

ATGTCTGCTTCGTCGGAAATCGTGGATTCCGGTAGATTTTCCGGCCAAATTACGCCATCCAGAGCTCTGGATAAGTCCAATTTCTCCCAGACTTGTAATCTGTTCTCTCAGTACTTGAAGGAAAACGCTACTTTCCCAGATCTAACTCTCGGTCGGAGAACAACACCATCAACTCCCACCATGAATCTTTTTCCGATAGCTGAAAAAACCCCACGATCGGCAGCGGTACAGCCGCAAACCACCGCCGGGCAGACTCAATC...

CDS

Download CDS FASTA

1017 bp · LXL04_018574|LXL04_018574|OH1004|CDS

ATGTCTGCTTCGTCGGAAATCGTGGATTCCGGTAGATTTTCCGGCCAAATTACGCCATCCAGAGCTCTGGATAAGTCCAATTTCTCCCAGACTTGTAATCTGTTCTCTCAGTACTTGAAGGAAAACGCTACTTTCCCAGATCTAACTCTCGGTCGGAGAACAACACCATCAACTCCCACCATGAATCTTTTTCCGATAGCTGAAAAAACCCCACGATCGGCAGCGGTACAGCCGCAAACCACCGCCGGGCAGACTCAATC...

Protein

Download Protein FASTA

338 aa · LXL04_018574|LXL04_018574|OH1004|PROTEIN

MSASSEIVDSGRFSGQITPSRALDKSNFSQTCNLFSQYLKENATFPDLTLGRRTTPSTPTMNLFPIAEKTPRSAAVQPQTTAGQTQSTPMTIFYNGQVMVFNDLSPEKVKEILMIAGKGVPQKPTKPEELSNTIVHDSIKIQRSQPVVADLPIARKASLARFLEKRKDRITARSPYQTQGESKQEDSKTWLGLGAQLDGIIGIGTAASLFDEFTAGDGHGTATRSGEVCQRQTPTAAPRRWLISVLQLFSCIYSNFTGVW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018574`
TK1151 ID	TkA08G068880
OH-1004 ID	LXL04_018574
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.078 / OH-1004 57.988 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018574

Location Chr04:14913947-14915787 (-)

Description Similar to TIFY10A: Protein TIFY 10A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19180`	Repressor of jasmonate responses.	No verified direct reference in this release
`At1g74950`	Repressor of jasmonate responses.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0402800`	Repressor of jasmonate responses (By similarity).	No verified direct reference in this release
`Os07g0615200`	Repressor of jasmonate responses.	No verified direct reference in this release
`UniProt: A2YNP2`	Repressor of jasmonate responses.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018574 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009555 pollen development Biological Process

GO:0009611 response to wounding Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:1900067 regulation of cellular response to alkaline pH Biological Process

GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G19180

ath:AT1G74950

dosa:Os03g0402800

dosa:Os07g0615200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.678

Rank 1 · LXL04_018574 · OH-1004

Cytoplasm0.320

Rank 2 · LXL04_018574 · OH-1004

Cell membrane0.118

Rank 3 · LXL04_018574 · OH-1004

Endoplasmic reticulum0.073

Rank 4 · LXL04_018574 · OH-1004

Plastid0.026

Rank 5 · LXL04_018574 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06200.20tify86-117 aa

PF09425.16Jas_motif152-177 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018574	`PF06200.20`	tify	86	117	1.6e-15	56.8
LXL04_018574	`PF09425.16`	Jas_motif	152	177	4e-15	56.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LMA8`	Arabidopsis thaliana	Protein TIFY 10A	36.220%	Swiss-Prot	moderate database homology
`Q9S7M2`	Arabidopsis thaliana	Protein TIFY 10B	35.345%	Swiss-Prot	weak database homology
`Q84R94`	Oryza sativa subsp. japonica	Protein TIFY 10a	34.804%	Swiss-Prot	moderate database homology
`Q8H395`	Oryza sativa subsp. japonica	Protein TIFY 10b	32.258%	Swiss-Prot	moderate database homology
`A2YNP2`	Oryza sativa subsp. indica	Protein TIFY 10b	31.797%	Swiss-Prot	moderate database homology

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