LXL04_018573 | RubberDandelionOmics

Gene overview

LXL04_018573

Reference: OH-1004 Chr: Chr04 Coordinates: 14873910-14874692 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

709 bp · LXL04_018573|LXL04_018573|OH1004|cDNA

ATGGGCAGTGGGCTAATTCCACCAACTCCACCAATCACAATTCGTGTTTTTCCCAACCTCTCCCTATAAAGGATTTGTAAATCGGTTGTACCCTGAATGTGATACAGACATGAGTGACAAGAGAAAACGTCCGGTGACCGGAAAGATCGTCACCTCCGAGGTACAATCAGGGTTTCCGGAGGTTTGTACCAGTCCGACGACTCCATTGGAGTTCAAAGTTTTGTCGCCTACAGGCATAATAAAGTGTGAGATGGGTGGGA...

CDS

Download CDS FASTA

624 bp · LXL04_018573|LXL04_018573|OH1004|CDS

TTGTACCCTGAATGTGATACAGACATGAGTGACAAGAGAAAACGTCCGGTGACCGGAAAGATCGTCACCTCCGAGGTACAATCAGGGTTTCCGGAGGTTTGTACCAGTCCGACGACTCCATTGGAGTTCAAAGTTTTGTCGCCTACAGGCATAATAAAGTGTGAGATGGGTGGGAACGGGATCGGGATCGGACTTGGAATAGTCGCCGCCCTAGAGAAATCCAACGAGTGTATTCCGGCGAAGAAGTCGAGTTTCAGATG...

Protein

Download Protein FASTA

207 aa · LXL04_018573|LXL04_018573|OH1004|PROTEIN

MYPECDTDMSDKRKRPVTGKIVTSEVQSGFPEVCTSPTTPLEFKVLSPTGIIKCEMGGNGIGIGLGIVAALEKSNECIPAKKSSFRCRKPIGNESGEECTRNWKPIEVREKVSIFDISPAKFSDGDVYKCIASDFLSSCHLCKKRLHGKDIYMYRGDKAFCSPECRSRQIGKDERLEKHCSKQASSSSSSSSNVTSPYVLATGIFAI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018573`
TK1151 ID	TkA08G068780
OH-1004 ID	LXL04_018573
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 88.235 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018573

Location Chr04:14873910-14874692 (+)

Description Similar to FLZ13: FCS-Like Zinc finger 13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74940`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g20700`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At1g19200`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At1g22160`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At1g78020`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis.2018 · DOI: 10.1111/tpj.13854

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018573 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0042594 response to starvation Biological Process

GO:0071368 cellular response to cytokinin stimulus Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090351 seedling development Biological Process

GO:1902074 response to salt Biological Process

GO:1905582 response to mannose Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G19200

ath:AT1G22160

ath:AT1G74940

ath:AT1G78020

ath:AT5G20700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.920

Rank 1 · LXL04_018573 · OH-1004

Cytoplasm0.166

Rank 2 · LXL04_018573 · OH-1004

Cell membrane0.036

Rank 3 · LXL04_018573 · OH-1004

Endoplasmic reticulum0.020

Rank 4 · LXL04_018573 · OH-1004

Mitochondrion0.012

Rank 5 · LXL04_018573 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04570.21zf-FLZ133-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018573	`PF04570.21`	zf-FLZ	133	175	2.3e-21	75.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GRN0`	Arabidopsis thaliana	FCS-Like Zinc finger 13	36.139%	Swiss-Prot	moderate database homology
`Q8GYX2`	Arabidopsis thaliana	FCS-Like Zinc finger 14	29.688%	Swiss-Prot	weak database homology
`F4IE21`	Arabidopsis thaliana	FCS-Like Zinc finger 12	36.406%	Swiss-Prot	moderate database homology
`Q8VY80`	Arabidopsis thaliana	FCS-Like Zinc finger 5	53.425%	Swiss-Prot	weak database homology
`Q9SGZ8`	Arabidopsis thaliana	FCS-Like Zinc finger 6	52.239%	Swiss-Prot	weak database homology

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