LXL04_018518 | RubberDandelionOmics

Gene overview

LXL04_018518

Reference: OH-1004 Chr: Chr04 Coordinates: 14114546-14116163 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

630 bp · LXL04_018518|LXL04_018518|OH1004|cDNA

ATGGATTGGGGAACGGTAACAACGGAAGACCTGATCGAAGCACTTAAGGAAGTGGATTGGTCATCGCCTCCTCGTCCTTTCAATGAATTCGTCTCCAAATTCACCGTTCCTCGTTCCTCTAACAAATGGAACAGTCGCCTTAAGTGTAATCTGTACTACTATCGGACAAATTACTTTCTTATGATCCTGTTCATACTTGGATTGGGATTTCTTAGGAGGCCACTTGCTATCGTTGCAGCTATGTCAACAGCTCTAACCAT...

CDS

Download CDS FASTA

630 bp · LXL04_018518|LXL04_018518|OH1004|CDS

ATGGATTGGGGAACGGTAACAACGGAAGACCTGATCGAAGCACTTAAGGAAGTGGATTGGTCATCGCCTCCTCGTCCTTTCAATGAATTCGTCTCCAAATTCACCGTTCCTCGTTCCTCTAACAAATGGAACAGTCGCCTTAAGTGTAATCTGTACTACTATCGGACAAATTACTTTCTTATGATCCTGTTCATACTTGGATTGGGATTTCTTAGGAGGCCACTTGCTATCGTTGCAGCTATGTCAACAGCTCTAACCAT...

Protein

Download Protein FASTA

209 aa · LXL04_018518|LXL04_018518|OH1004|PROTEIN

MDWGTVTTEDLIEALKEVDWSSPPRPFNEFVSKFTVPRSSNKWNSRLKCNLYYYRTNYFLMILFILGLGFLRRPLAIVAAMSTALTMAFLNDSFAGTFSEKVTRTIRQFSPHIAAKMRPPLTPVLRGRPSSKRTIFICGRPRWIIVLASSSVSFLLWFVSCGLLTLLWALTTGLLATIVHASFRTPNLKARLNTFREEFRAVWRNYSEL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018518`
TK1151 ID	TkA08G066090
OH-1004 ID	LXL04_018518
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018518

Location Chr04:14114546-14116163 (-)

Description Similar to PRA1A2: PRA1 family protein A2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05987`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At5g02040`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At3g11397`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At1g04260`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018518 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016192 vesicle-mediated transport Biological Process

GO:0046739 transport of virus in multicellular host Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010008 endosome membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G04260

ath:AT3G11397

ath:AT5G02040

ath:AT5G05987

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.544

Rank 1 · LXL04_018518 · OH-1004

Nucleus0.204

Rank 2 · LXL04_018518 · OH-1004

Golgi apparatus0.175

Rank 3 · LXL04_018518 · OH-1004

Cytoplasm0.129

Rank 4 · LXL04_018518 · OH-1004

Cell membrane0.100

Rank 5 · LXL04_018518 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03208.25PRA120-192 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018518	`PF03208.25`	PRA1	20	192	1.2e-34	119.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GWC3`	Arabidopsis thaliana	PRA1 family protein A2	65.550%	Swiss-Prot	strong database homology
`Q9LZM7`	Arabidopsis thaliana	PRA1 family protein A1	73.206%	Swiss-Prot	strong database homology
`Q8W115`	Arabidopsis thaliana	PRA1 family protein A3	66.507%	Swiss-Prot	strong database homology
`P93829`	Arabidopsis thaliana	PRA1 family protein D	33.333%	Swiss-Prot	weak database homology

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