LXL04_018509 | RubberDandelionOmics

Gene overview

LXL04_018509

Reference: OH-1004 Chr: Chr04 Coordinates: 13951299-13966463 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1728 bp · LXL04_018509|LXL04_018509|OH1004|cDNA

ATGGCTCAGTTTTATTCAACTTATTTATCTCAATCGTTCACTGAAGCATTTCATACTCCCTCCATCCCCAATTTCAACGCAAAACCAGGTGTTTTGTTTCAATTAGATAATCGGAAAATGACAGATGAAGTGAAGTTGTATGGTGCTAAGGGAAGTCCATTCGCTTGCAGAGTGAAAATCGCTTTGAATACGAAGGGAATCAAATACGAAAACATCGAAGAAGATATCTTCAACAAGAGTGCCGACCTATTAAAGTATAA...

CDS

Download CDS FASTA

1728 bp · LXL04_018509|LXL04_018509|OH1004|CDS

ATGGCTCAGTTTTATTCAACTTATTTATCTCAATCGTTCACTGAAGCATTTCATACTCCCTCCATCCCCAATTTCAACGCAAAACCAGGTGTTTTGTTTCAATTAGATAATCGGAAAATGACAGATGAAGTGAAGTTGTATGGTGCTAAGGGAAGTCCATTCGCTTGCAGAGTGAAAATCGCTTTGAATACGAAGGGAATCAAATACGAAAACATCGAAGAAGATATCTTCAACAAGAGTGCCGACCTATTAAAGTATAA...

Protein

Download Protein FASTA

575 aa · LXL04_018509|LXL04_018509|OH1004|PROTEIN

MAQFYSTYLSQSFTEAFHTPSIPNFNAKPGVLFQLDNRKMTDEVKLYGAKGSPFACRVKIALNTKGIKYENIEEDIFNKSADLLKYNPVHKKVPVLVHNGNPIAESLVILEYIDDVWKGVPIMPRDSYERALARFWAKFLDDKCIPALKAVGSNGDEKVVAEACEQLQILENELKLKGTKFFGGDDINLIDIAGVFIAFWLGIREEVAGIKFFTEDKFPKLTKWAHDFVNREAVKDALPPREHTLGFYNKMFGKINRMAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018509`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018509

Location Chr04:13951299-13966463 (-)

Description Similar to HSP26-A: Probable glutathione S-transferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09270`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At2g29420`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018509 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009408 response to heat Biological Process

GO:0009733 response to auxin Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0010038 response to metal ion Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004364 glutathione transferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G09270

gmx:100527851

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.802

Rank 1 · LXL04_018509 · OH-1004

Nucleus0.174

Rank 2 · LXL04_018509 · OH-1004

Mitochondrion0.078

Rank 3 · LXL04_018509 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_018509 · OH-1004

Cell membrane0.069

Rank 5 · LXL04_018509 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798.27GST_N43-114 aa

PF13417.13GST_N_346-115 aa

PF13409.13GST_N_252-115 aa

PF00043.31GST_C157-232 aa

PF02798.27GST_N261-332 aa

PF13417.13GST_N_3264-333 aa

PF13409.13GST_N_2270-333 aa

PF00043.31GST_C377-448 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018509	`PF02798.27`	GST_N	43	114	1.8e-44	150.6
LXL04_018509	`PF13417.13`	GST_N_3	46	115	3.3e-35	121.0
LXL04_018509	`PF13409.13`	GST_N_2	52	115	4e-32	111.3
LXL04_018509	`PF00043.31`	GST_C	157	232	4.1e-34	117.4
LXL04_018509	`PF02798.27`	GST_N	261	332	1.8e-44	150.6
LXL04_018509	`PF13417.13`	GST_N_3	264	333	3.3e-35	121.0
LXL04_018509	`PF13409.13`	GST_N_2	270	333	4e-32	111.3
LXL04_018509	`PF00043.31`	GST_C	377	448	4.1e-34	117.4
LXL04_018509	`PF00043.31`	GST_C	478	549	4.1e-34	117.4
LXL04_018509	`PF25907.1`	DUF7962	479	549	1.7e-16	61.2
LXL04_018509	`PF13410.12`	GST_C_2	486	546	2.6e-11	44.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SR36`	Arabidopsis thaliana	Glutathione S-transferase U8	55.093%	Swiss-Prot	weak database homology
`Q9ZW24`	Arabidopsis thaliana	Glutathione S-transferase U7	44.889%	Swiss-Prot	weak database homology

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