LXL04_018508 | RubberDandelionOmics

Gene overview

LXL04_018508

Reference: OH-1004 Chr: Chr04 Coordinates: 13949480-13950238 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_018508|LXL04_018508|OH1004|cDNA

ATGACGGATGAAGTAAAGTTATATGGCGCTGCAGCAAGTCCAACGGTTTTCAGAGTGAAAATCGCTTTGAATATGAAGGGGATCAAGTACGAAAACGTCGAAGAAGATCTCGCGAACAAAAGCGCCGATCTTTTGAAGTATAATCCTGTTCATAAGAAAGTACCGGTGCTTGTGCATAACGGAAATCCGATCGCAGAGTCTCTTGTGATCGTTGAATACATCGATGATGTCTGGAAAGGGGTTCCGATTTTGCCTGAGGA...

CDS

Download CDS FASTA

654 bp · LXL04_018508|LXL04_018508|OH1004|CDS

ATGACGGATGAAGTAAAGTTATATGGCGCTGCAGCAAGTCCAACGGTTTTCAGAGTGAAAATCGCTTTGAATATGAAGGGGATCAAGTACGAAAACGTCGAAGAAGATCTCGCGAACAAAAGCGCCGATCTTTTGAAGTATAATCCTGTTCATAAGAAAGTACCGGTGCTTGTGCATAACGGAAATCCGATCGCAGAGTCTCTTGTGATCGTTGAATACATCGATGATGTCTGGAAAGGGGTTCCGATTTTGCCTGAGGA...

Protein

Download Protein FASTA

217 aa · LXL04_018508|LXL04_018508|OH1004|PROTEIN

MTDEVKLYGAAASPTVFRVKIALNMKGIKYENVEEDLANKSADLLKYNPVHKKVPVLVHNGNPIAESLVIVEYIDDVWKGVPILPEDPYERALARFWAKFIDDKCMPAAFGVFGSNGDEQVVAEACEQLQILENELEFKGTKFFGGDDINIVDIAADFLAYWLGTLEEVAGIKFVTKEKFPRITEWGDNFIKCQIVKEILPSREYLLDVFKKRFGKG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018508`
TK1151 ID	TkA08G065650
OH-1004 ID	LXL04_018508
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	73.700
Protein coverage (%)	TK1151 99.556 / OH-1004 99.539 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018508

Location Chr04:13949480-13950238 (-)

Description Similar to HSP26-A: Probable glutathione S-transferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09270`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018508 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009408 response to heat Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0010038 response to metal ion Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT3G09270

gmx:100527851

nta:107765700

nta:107802704

zma:541845

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.828

Rank 1 · LXL04_018508 · OH-1004

Nucleus0.195

Rank 2 · LXL04_018508 · OH-1004

Endoplasmic reticulum0.068

Rank 3 · LXL04_018508 · OH-1004

Mitochondrion0.059

Rank 4 · LXL04_018508 · OH-1004

Peroxisome0.050

Rank 5 · LXL04_018508 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798.27GST_N4-75 aa

PF13417.13GST_N_37-76 aa

PF13409.13GST_N_212-76 aa

PF00043.31GST_C121-191 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018508	`PF02798.27`	GST_N	4	75	1.8e-20	73.8
LXL04_018508	`PF13417.13`	GST_N_3	7	76	5e-16	59.5
LXL04_018508	`PF13409.13`	GST_N_2	12	76	7.9e-15	55.9
LXL04_018508	`PF00043.31`	GST_C	121	191	2.7e-08	34.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SR36`	Arabidopsis thaliana	Glutathione S-transferase U8	52.752%	Swiss-Prot	strong database homology

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