LXL04_018429 | RubberDandelionOmics

Gene overview

LXL04_018429

Reference: OH-1004 Chr: Chr04 Coordinates: 12768634-12769938 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

834 bp · LXL04_018429|LXL04_018429|OH1004|cDNA

ATGTATTTTACGAGTATGGTTCAGTATATGAGGGAGCAGTTATGGAGTATTTGTTCGAAGGCGTTTAGATCGAGAGTGAGTTACAAAAGAGGACTTGACCAAAGATTTAATCCTCATTTTTGGAAATTAAGTTCGGCCTTTGCGAAAACCGAAACTGAATTCATTGCTTGTGCCCGTGAAAAGGTTGCGAGCTCACCATCGATCGATGGTGCGGTTGCAAGCTGTTTGGTTGCTTTCGTGCGGGACCAAAAGGTTATCAT...

CDS

Download CDS FASTA

834 bp · LXL04_018429|LXL04_018429|OH1004|CDS

ATGTATTTTACGAGTATGGTTCAGTATATGAGGGAGCAGTTATGGAGTATTTGTTCGAAGGCGTTTAGATCGAGAGTGAGTTACAAAAGAGGACTTGACCAAAGATTTAATCCTCATTTTTGGAAATTAAGTTCGGCCTTTGCGAAAACCGAAACTGAATTCATTGCTTGTGCCCGTGAAAAGGTTGCGAGCTCACCATCGATCGATGGTGCGGTTGCAAGCTGTTTGGTTGCTTTCGTGCGGGACCAAAAGGTTATCAT...

Protein

Download Protein FASTA

277 aa · LXL04_018429|LXL04_018429|OH1004|PROTEIN

MYFTSMVQYMREQLWSICSKAFRSRVSYKRGLDQRFNPHFWKLSSAFAKTETEFIACAREKVASSPSIDGAVASCLVAFVRDQKVIISHVGNCRAVVGVKKWGFLKYTIISEALTTEHSEKWGILDELIRDPILCSVPSFSVRDIEPRDSFIVVASDGLWNILSNGEVVQFVYDNRGKNGIAKLLVEKAMRKAEEMREKRIKDMVGSVEVGRAYDDITVVVLLLNKGKKKASLKKSDSPHLPLQLPLIIWYSTLFGVLEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018429`
TK1151 ID	TkA08G059490
OH-1004 ID	LXL04_018429
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.300
Protein coverage (%)	TK1151 88.889 / OH-1004 64.621 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018429

Location Chr04:12768634-12769938 (-)

Description Similar to Os03g0137200: Probable protein phosphatase 2C 28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38520`	Dephosphorylates and represses plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At5g66080`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0137200`	Probable protein phosphatase 2C 28.	No verified direct reference in this release
`Os03g0761100`	Probable protein phosphatase 2C 34.	No verified direct reference in this release
`UniProt: Q5MFV5`	Probable protein phosphatase 2C 34.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018429 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1900036 positive regulation of cellular response to heat Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G38520

ath:AT5G66080

dosa:Os03g0137200

dosa:Os03g0761100

osa:4331548

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.413

Rank 1 · LXL04_018429 · OH-1004

Cytoplasm0.368

Rank 2 · LXL04_018429 · OH-1004

Cell membrane0.149

Rank 3 · LXL04_018429 · OH-1004

Endoplasmic reticulum0.100

Rank 4 · LXL04_018429 · OH-1004

Mitochondrion0.083

Rank 5 · LXL04_018429 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C135-193 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018429	`PF00481.27`	PP2C	135	193	2.4e-15	57.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5PNS9`	Arabidopsis thaliana	Probable protein phosphatase 2C 64	29.237%	Swiss-Prot	weak database homology
`Q9FKX4`	Arabidopsis thaliana	Probable protein phosphatase 2C 79	44.348%	Swiss-Prot	weak database homology
`Q10S32`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 28	29.237%	Swiss-Prot	weak database homology
`Q94H98`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 34	25.795%	Swiss-Prot	weak database homology
`Q5MFV5`	Oryza sativa subsp. indica	Probable protein phosphatase 2C 34	25.795%	Swiss-Prot	weak database homology

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