Gene Card
Gene overview
cDNA / CDS / Protein Sequences
585 bp · LXL04_018420|LXL04_018420|OH1004|cDNA
ATGGCTTCTTCGTACAAGAAATACGAAATCAGAAACCGAAACCCTAACCCCCAAACCTCCGTCTTGTTAGTAATTGATATGCAGAACCACTTCTCCTCCATCGCCAAACCAATAATTCCATCAATCACGACAACAATCGACACCTGCCGCCGTGCTTCCATCCCTGTCATCTTCACGCGCCACTGCCACAAGTCCCCTGCCGATCACCGCATGCTCGGGGAGTGGTGGGGAAGCGATCTGGTCATCGACGGCACGCCGGA...
585 bp · LXL04_018420|LXL04_018420|OH1004|CDS
ATGGCTTCTTCGTACAAGAAATACGAAATCAGAAACCGAAACCCTAACCCCCAAACCTCCGTCTTGTTAGTAATTGATATGCAGAACCACTTCTCCTCCATCGCCAAACCAATAATTCCATCAATCACGACAACAATCGACACCTGCCGCCGTGCTTCCATCCCTGTCATCTTCACGCGCCACTGCCACAAGTCCCCTGCCGATCACCGCATGCTCGGGGAGTGGTGGGGAAGCGATCTGGTCATCGACGGCACGCCGGA...
Protein
Download Protein FASTA194 aa · LXL04_018420|LXL04_018420|OH1004|PROTEIN
MASSYKKYEIRNRNPNPQTSVLLVIDMQNHFSSIAKPIIPSITTTIDTCRRASIPVIFTRHCHKSPADHRMLGEWWGSDLVIDGTPDSELMPEIGRRDEELVVEKNTYSGFRGTQLEERLKDMGVEEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATATSSEELHQATLMNMAHGFAYLVDCKTLQSAFSL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018420 |
|---|---|
| TK1151 ID | TkA08G059210 |
| OH-1004 ID | LXL04_018420 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 86.598Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018420 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:12651269-12651853 (-) | |||||||||
| Description | Similar to NIC2: Nicotinamidase 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006212 uracil catabolic process Biological Process GO:0019363 pyridine nucleotide biosynthetic process Biological Process GO:0019674 NAD+ metabolic process Biological Process GO:0019740 nitrogen utilization Biological Process GO:0005829 cytosol Cellular Component GO:0008908 isochorismatase activity Molecular Function GO:0008936 nicotinamidase activity Molecular Function GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides Molecular Function | |||||||||
| KEGG gene cross-reference | aci:ACIAD0028 ath:AT5G23220 ath:AT5G23230 bsu:BSU31970 spe:Spro_1822 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00857.27Isochorismatase20-184 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018420 | PF00857.27 | Isochorismatase | 20 | 184 | 4.1e-46 | 158.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.