LXL04_018399 | RubberDandelionOmics

Gene overview

LXL04_018399

Reference: OH-1004 Chr: Chr04 Coordinates: 12488457-12489502 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

762 bp · LXL04_018399|LXL04_018399|OH1004|cDNA

ATGGCGGAGGAAGAAGACGATTACATGGGCGACCTCTCTCAGTTTCTCCCTTCCCAACTCCAAGCTACTCCAAATCCTCCCGCCCAAAAGGTTCCTATCATCAACGCCCCTAATAAAGCAATTACTTCACAGTTTTCCAGAAAGAGACCGAAAACCCGAAACTGGCAAGAACAAAGAAAACTCAAGCGAGATATCAAGCAGGTAGAAGAGGACGAACGAACCCTAGCTAACCTAGAATCAGCCATCCCCCAATCCAACAT...

CDS

Download CDS FASTA

762 bp · LXL04_018399|LXL04_018399|OH1004|CDS

ATGGCGGAGGAAGAAGACGATTACATGGGCGACCTCTCTCAGTTTCTCCCTTCCCAACTCCAAGCTACTCCAAATCCTCCCGCCCAAAAGGTTCCTATCATCAACGCCCCTAATAAAGCAATTACTTCACAGTTTTCCAGAAAGAGACCGAAAACCCGAAACTGGCAAGAACAAAGAAAACTCAAGCGAGATATCAAGCAGGTAGAAGAGGACGAACGAACCCTAGCTAACCTAGAATCAGCCATCCCCCAATCCAACAT...

Protein

Download Protein FASTA

253 aa · LXL04_018399|LXL04_018399|OH1004|PROTEIN

MAEEEDDYMGDLSQFLPSQLQATPNPPAQKVPIINAPNKAITSQFSRKRPKTRNWQEQRKLKRDIKQVEEDERTLANLESAIPQSNIGFKMLKQMGYTPGSGLGGSGRTEPVGLEIRRSRAGIGREDPIKEKLRKDEEMLWEKRKKEEELMADFGCRVKERWRNKRVVVNFHKAKGVLDQLENKEVVVEVEKKDDDEKDDEDDEEEEVITEEDLLEILMKLRDDFRYCLFCGCQYESMEALLDNCPGINEDDH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018399`
TK1151 ID	TkA08G058720
OH-1004 ID	LXL04_018399
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_018399`
Location	Chr04:12488457-12489502 (-)
Description	Similar to gpatch11: G patch domain-containing protein 11
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018399` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000776 kinetochore Cellular Component GO:0003676 nucleic acid binding Molecular Function
KEGG gene cross-reference	bta:512655 dre:436666 hsa:253635 mmu:53951 xtr:448554 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.945

Rank 1 · LXL04_018399 · OH-1004

Cytoplasm0.189

Rank 2 · LXL04_018399 · OH-1004

Mitochondrion0.026

Rank 3 · LXL04_018399 · OH-1004

Cell membrane0.012

Rank 4 · LXL04_018399 · OH-1004

Golgi apparatus0.006

Rank 5 · LXL04_018399 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12656.13G-patch_279-126 aa

PF01585.29G-patch85-125 aa

PF13821.12DUF4187200-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018399	`PF12656.13`	G-patch_2	79	126	8.2e-06	26.5
LXL04_018399	`PF01585.29`	G-patch	85	125	1.2e-12	48.2
LXL04_018399	`PF13821.12`	DUF4187	200	253	1e-18	67.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card