LXL04_018395 | RubberDandelionOmics

Gene overview

LXL04_018395

Reference: OH-1004 Chr: Chr04 Coordinates: 12469286-12472606 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1458 bp · LXL04_018395|LXL04_018395|OH1004|cDNA

ATGCCTAATTTCAAGTTTCTTTGTATTTTCCTTAAGCTTTTCTTGGTTCTTCTATGTGTCTGCAATATTGCCAATGCCACTCAAGTCTCTCATGATGGACGAGCAATTACAATTAATGGCCAACGTCGTATCATCATTTCTGGTTCCATTCACTACCCTCGTAGTACTCCTGAGAATGAGATGCAAAATTTTACTACAAAGATAGTGAATATGGTGAAAGAAGAGAACCTCTTTGCTGCCCAGGGAGGACCCATTATACT...

CDS

Download CDS FASTA

1458 bp · LXL04_018395|LXL04_018395|OH1004|CDS

ATGCCTAATTTCAAGTTTCTTTGTATTTTCCTTAAGCTTTTCTTGGTTCTTCTATGTGTCTGCAATATTGCCAATGCCACTCAAGTCTCTCATGATGGACGAGCAATTACAATTAATGGCCAACGTCGTATCATCATTTCTGGTTCCATTCACTACCCTCGTAGTACTCCTGAGAATGAGATGCAAAATTTTACTACAAAGATAGTGAATATGGTGAAAGAAGAGAACCTCTTTGCTGCCCAGGGAGGACCCATTATACT...

Protein

Download Protein FASTA

485 aa · LXL04_018395|LXL04_018395|OH1004|PROTEIN

MPNFKFLCIFLKLFLVLLCVCNIANATQVSHDGRAITINGQRRIIISGSIHYPRSTPENEMQNFTTKIVNMVKEENLFAAQGGPIILAQMLSLDIGVPWIMCQQPDAPQPMINTCNGWYCDNFTPNNPNSPKMWTENWTGWFKNWGGLDPKRTAEDVAFAVARFFQSGGTFQNYYMYHGGTNFGRSAGGPYITTSYDYDAPLDEYGNLNQPKYGHLKELHDVLHSMEKILTYGNITKINFGNSVSGTIYATINRQTCFFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018395`
TK1151 ID	TkA08G058570
OH-1004 ID	LXL04_018395
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.400
Protein coverage (%)	TK1151 91.743 / OH-1004 77.732 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018395

Location Chr04:12469286-12472606 (+)

Description Similar to BGAL15: Beta-galactosidase 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31740`	Beta-galactosidase 15.	No verified direct reference in this release
`At5g20710`	Beta-galactosidase 7.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0533400`	Beta-galactosidase 1.	No verified direct reference in this release
`Os10g0330600`	Beta-galactosidase 13.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018395 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G31740

ath:AT5G20710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.842

Rank 1 · LXL04_018395 · OH-1004

Cytoplasm0.061

Rank 2 · LXL04_018395 · OH-1004

Lysosome / Vacuole0.039

Rank 3 · LXL04_018395 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_018395 · OH-1004

Cell membrane0.031

Rank 5 · LXL04_018395 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301.26Glyco_hydro_3590-221 aa

PF17834.8GHD247-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018395	`PF01301.26`	Glyco_hydro_35	90	221	7.9e-52	177.5
LXL04_018395	`PF17834.8`	GHD	247	300	2.7e-20	72.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6W4`	Arabidopsis thaliana	Beta-galactosidase 15	62.299%	Swiss-Prot	strong database homology
`Q9SCV5`	Arabidopsis thaliana	Beta-galactosidase 7	60.417%	Swiss-Prot	strong database homology
`Q8RUV9`	Oryza sativa subsp. japonica	Beta-galactosidase 1	49.206%	Swiss-Prot	moderate database homology
`Q7G3T8`	Oryza sativa subsp. japonica	Beta-galactosidase 13	48.526%	Swiss-Prot	moderate database homology

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