LXL04_018383 | RubberDandelionOmics

Gene overview

LXL04_018383

Reference: OH-1004 Chr: Chr04 Coordinates: 12307913-12309711 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_018383|LXL04_018383|OH1004|cDNA

ATGATGCTGTGCTGTGGATCTTGTCGTAGGAAGAAAGAGAACCAGAATACTAATGATGGTGCAACCACGAACAATTGTCAAACAGCACCACCTCGCGGACCCCTTTATGCCGGAGGCAGCATGAGAGCACCAAGAACCAATGGACCTGGGGCCAAGAAAGATTCACCAATCGAAGCACCATCTTTAACATTCGAAGAACTAAACAAAATGACGGATAATTTCGGTTCAAAATCTTTAATTGGTGAAGGCTCTTACAGCCG...

CDS

Download CDS FASTA

1080 bp · LXL04_018383|LXL04_018383|OH1004|CDS

ATGATGCTGTGCTGTGGATCTTGTCGTAGGAAGAAAGAGAACCAGAATACTAATGATGGTGCAACCACGAACAATTGTCAAACAGCACCACCTCGCGGACCCCTTTATGCCGGAGGCAGCATGAGAGCACCAAGAACCAATGGACCTGGGGCCAAGAAAGATTCACCAATCGAAGCACCATCTTTAACATTCGAAGAACTAAACAAAATGACGGATAATTTCGGTTCAAAATCTTTAATTGGTGAAGGCTCTTACAGCCG...

Protein

Download Protein FASTA

359 aa · LXL04_018383|LXL04_018383|OH1004|PROTEIN

MMLCCGSCRRKKENQNTNDGATTNNCQTAPPRGPLYAGGSMRAPRTNGPGAKKDSPIEAPSLTFEELNKMTDNFGSKSLIGEGSYSRIFYGKLEDGEEVAIKKLDTTSSTEPLSEFKEKLSTISRLKSEYFCELRGYCLENHNRILLYQYANKGCLHEVLHGGKGGVELNWVQRVRIAYGAAKGLEYLHEKVQPPIVHRDIRSSNVLVFDDFHSKISDFSLCNMLSENPARMHSTRVLGTFGYHAPEYAMTGQITNKSDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018383`
TK1151 ID	TkA08G057970
OH-1004 ID	LXL04_018383
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018383

Location Chr04:12307913-12309711 (-)

Description Similar to At2g41970: Probable protein kinase At2g41970

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41970`	May phosphorylate ABA receptors and participate in ABA signaling during dehydration.	Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149
`At2g43230`	Receptor-like cytoplasmic kinase (RLCK) that triggers abscisic acid (ABA) signaling in response to dehydration by phosphorylating and activating ABA receptors to support their monomerization and enhance their ABA binding affinity; they in turn repress PP2C protein phosphatases acting as negative regulators of ABA responses.	CARK6 is involved in abscisic acid to regulate stress responses in Arabidopsis thaliana.2019 · DOI: 10.1016/j.bbrc.2019.03.180 Catalytically inactive subgroup VIII receptor-like cytoplasmic kinases regulate the immune-triggered oxidative burst in Arabidopsis thaliana.2025 · DOI: 10.1093/jxb/erae486
`At2g30740`	Receptor-like cytoplasmic kinase (RLCK) that triggers abscisic acid (ABA) signaling in response to dehydration by phosphorylating and activating ABA receptors to support their monomerization and enhance their ABA binding affinity; they in turn repress PP2C protein phosphatases acting as negative regulators of ABA responses (By similarity).	No verified direct reference in this release
`At3g59350`	Receptor-like cytoplasmic kinase (RLCK) that triggers abscisic acid (ABA) signaling in response to dehydration by phosphorylating and activating ABA receptors (e.g. PYL8/RCAR3, PYR1/RCAR11, PYL1/RCAR12, PYL3/RCAR13 and PYL2/RCAR14) to support their monomerization and enhance their ABA binding affinity; they in turn repress PP2C protein phosphatases acting as negative regulators of ABA responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018383 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010375 stomatal complex patterning Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0090333 regulation of stomatal closure Biological Process

GO:1901653 cellular response to peptide Biological Process

GO:2000037 regulation of stomatal complex patterning Biological Process

GO:2000038 regulation of stomatal complex development Biological Process

KEGG gene cross-reference

ath:AT2G30740

ath:AT2G41970

ath:AT3G59350

sly:544006

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.729

Rank 1 · LXL04_018383 · OH-1004

Cytoplasm0.233

Rank 2 · LXL04_018383 · OH-1004

Nucleus0.204

Rank 3 · LXL04_018383 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_018383 · OH-1004

Golgi apparatus0.026

Rank 5 · LXL04_018383 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase77-339 aa

PF07714.24PK_Tyr_Ser-Thr78-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018383	`PF00069.32`	Pkinase	77	339	3.2e-35	122.5
LXL04_018383	`PF07714.24`	PK_Tyr_Ser-Thr	78	346	1e-44	153.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93749`	Arabidopsis thaliana	Protein CYTOSOLIC ABA RECEPTOR KINASE 4	67.292%	Swiss-Prot	strong database homology
`Q9ZW72`	Arabidopsis thaliana	Protein CYTOSOLIC ABA RECEPTOR KINASE 6	61.202%	Swiss-Prot	strong database homology
`O49339`	Arabidopsis thaliana	Protein CYTOSOLIC ABA RECEPTOR KINASE 8	66.343%	Swiss-Prot	strong database homology
`B9DFG5`	Arabidopsis thaliana	Protein CYTOSOLIC ABA RECEPTOR KINASE 5	66.254%	Swiss-Prot	strong database homology

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