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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018376
Reference: OH-1004 Chr: Chr04 Coordinates: 12264378-12268340 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2715 bp · LXL04_018376|LXL04_018376|OH1004|cDNA

ATGGCATTGACAGAGAAGGACGTTGGTGGAGGGAAAGAGAAGGGTAAAGTTGAAGATAACGGTTTCCTGAAAGCAACAGAACCCTCCTTAAGTATCAGCAATTCTACAACTTCCACTACTCCAATAGAAAAGAGTTATGAAGGGAAAGATGCACTTGGTTATGCCAATGTTCTTCGTTCCAGAAACAAATTCGTGGAAGCTCTTGCTATTTATGAAAGTATACTAGAGAAAGATAAAACCAATGTTGAGGCCCATATTGG...

CDS

Download CDS FASTA

2715 bp · LXL04_018376|LXL04_018376|OH1004|CDS

ATGGCATTGACAGAGAAGGACGTTGGTGGAGGGAAAGAGAAGGGTAAAGTTGAAGATAACGGTTTCCTGAAAGCAACAGAACCCTCCTTAAGTATCAGCAATTCTACAACTTCCACTACTCCAATAGAAAAGAGTTATGAAGGGAAAGATGCACTTGGTTATGCCAATGTTCTTCGTTCCAGAAACAAATTCGTGGAAGCTCTTGCTATTTATGAAAGTATACTAGAGAAAGATAAAACCAATGTTGAGGCCCATATTGG...

Protein

Download Protein FASTA

904 aa · LXL04_018376|LXL04_018376|OH1004|PROTEIN

MALTEKDVGGGKEKGKVEDNGFLKATEPSLSISNSTTSTTPIEKSYEGKDALGYANVLRSRNKFVEALAIYESILEKDKTNVEAHIGKGICLQMQNMGRQSFESFSEAVKLDPQNACALTHCGILYKDEGRLVEAAESYRKALEADSSYKPAAECLSIVLTDIGTSLKLAGNTQDGIQKYYDAIKIDSHYAPAYYNLGVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018376
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018376
LocationChr04:12264378-12268340 (+)
DescriptionSimilar to SPY: Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g11540 Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0559300 Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018376 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009736 cytokinin-activated signaling pathway Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009908 flower development Biological Process
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0030154 cell differentiation Biological Process
GO:0036066 protein O-linked glycosylation via fucose Biological Process
GO:0048511 rhythmic process Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016262 protein N-acetylglucosaminyltransferase activity Molecular Function
GO:0046922 peptide-O-fucosyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G11540
dosa:Os08g0559300
sly:543775
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.699
Rank 1 · LXL04_018376 · OH-1004
Nucleus0.310
Rank 2 · LXL04_018376 · OH-1004
Mitochondrion0.069
Rank 3 · LXL04_018376 · OH-1004
Cell membrane0.063
Rank 4 · LXL04_018376 · OH-1004
Peroxisome0.055
Rank 5 · LXL04_018376 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29386.1CFAP70_mid_TPR62-152 aa
PF29407.1CFAP70_TPR_C164-246 aa
PF13414.13TPR_11175-203 aa
PF13431.13TPR_17180-211 aa
PF00515.35TPR_1191-217 aa
PF13181.13TPR_8191-218 aa
PF13371.13TPR_9201-260 aa
PF13414.13TPR_11206-237 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018376PF29386.1CFAP70_mid_TPR621521.8e-1558.1
LXL04_018376PF29407.1CFAP70_TPR_C1642462e-1247.9
LXL04_018376PF13414.13TPR_111752031.5e-44150.1
LXL04_018376PF13431.13TPR_171802113.5e-35118.0
LXL04_018376PF00515.35TPR_11912173.4e-67220.4
LXL04_018376PF13181.13TPR_81912183.7e-44145.8
LXL04_018376PF13371.13TPR_92012603.3e-1763.0
LXL04_018376PF13414.13TPR_112062371.5e-44150.1
LXL04_018376PF10373.16EST1_DNA_bind2102771.5e-1351.6
LXL04_018376PF00515.35TPR_12252583.4e-67220.4
LXL04_018376PF07719.24TPR_22252572.5e-48158.9
LXL04_018376PF13181.13TPR_82252573.7e-44145.8
LXL04_018376PF13424.13TPR_122252934.2e-35120.5
LXL04_018376PF00515.35TPR_13003333.4e-67220.4
LXL04_018376PF00515.35TPR_13343673.4e-67220.4
LXL04_018376PF07719.24TPR_23343662.5e-48158.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q96301Arabidopsis thalianaProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY80.247%Swiss-Protstrong database homology
Q6YZI0Oryza sativa subsp. japonicaProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY80.167%Swiss-Protstrong database homology

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