LXL04_018354 | RubberDandelionOmics

Gene overview

LXL04_018354

Reference: OH-1004 Chr: Chr04 Coordinates: 11983221-11985582 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1152 bp · LXL04_018354|LXL04_018354|OH1004|cDNA

ATGAAAATGGCGAATGCTATATCCTTCAAGACTTTAATGCTCAAAATCGGCACACATCGTATACAAATAGTTTTGGTTTCAGATATAGAAATATCACCATTTCAACCTATAATCAATAGTTTTGCCTATATAGAGTTCAATGTGATTGGTCATGCAGGCGTCTGGAACACAGCTTCGTTGAATCATACTCTGGGAATTATGCGGATTCAGAGCCTTCATGCCAGTTCAACCTGGTTGCAACTCAATTCCTCTGATAGAGC...

CDS

Download CDS FASTA

1152 bp · LXL04_018354|LXL04_018354|OH1004|CDS

ATGAAAATGGCGAATGCTATATCCTTCAAGACTTTAATGCTCAAAATCGGCACACATCGTATACAAATAGTTTTGGTTTCAGATATAGAAATATCACCATTTCAACCTATAATCAATAGTTTTGCCTATATAGAGTTCAATGTGATTGGTCATGCAGGCGTCTGGAACACAGCTTCGTTGAATCATACTCTGGGAATTATGCGGATTCAGAGCCTTCATGCCAGTTCAACCTGGTTGCAACTCAATTCCTCTGATAGAGC...

Protein

Download Protein FASTA

383 aa · LXL04_018354|LXL04_018354|OH1004|PROTEIN

MKMANAISFKTLMLKIGTHRIQIVLVSDIEISPFQPIINSFAYIEFNVIGHAGVWNTASLNHTLGIMRIQSLHASSTWLQLNSSDRALNSSIYISSRKSKFVTASFCTSKPQQPSIKCYVKFRPCIDIHKGKVKQIVGSTLSDLKESGSTLVTNFESDKSAAEYANLYKEDGLEGGHVIMLGADPLSNQSAIEALHAYPGVGGLQVGGGINSGNALSYIKEGASHVIITSYVFNNGEMDLERLKGLVNLIGKERLVLDLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018354`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018354

Location Chr04:11983221-11985582 (+)

Description Similar to HISN3: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36230`	Component of the histidine biosynthesis pathway that catalyzes the isomerization of 5'-ProFAR (pro-phosphoribosyl formimino-5-aminoimidazole-4-carboxamide ribonucleotide, referred as 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide) to PrFAR (phosphoribulosyl formimino-5-aminoimidazole-4-carboxamide ribonucleotide, referred as 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide).	Genetic dissection of histidine biosynthesis in Arabidopsis.2007 · DOI: 10.1104/pp.107.096511

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018354 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000105 L-histidine biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G36230

mtr:11441829

ncr:NCU00150

spo:2543103

yli:2908162

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.967

Rank 1 · LXL04_018354 · OH-1004

Mitochondrion0.049

Rank 2 · LXL04_018354 · OH-1004

Cytoplasm0.042

Rank 3 · LXL04_018354 · OH-1004

Nucleus0.029

Rank 4 · LXL04_018354 · OH-1004

Peroxisome0.025

Rank 5 · LXL04_018354 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00977.28His_biosynth124-359 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018354	`PF00977.28`	His_biosynth	124	359	6e-29	101.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82782`	Arabidopsis thaliana	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HISN3, chloroplastic	72.131%	Swiss-Prot	strong database homology

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