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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018330
Reference: OH-1004 Chr: Chr04 Coordinates: 11734035-11740142 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3357 bp · LXL04_018330|LXL04_018330|OH1004|cDNA

ATGATTCACGTGTATGCAAAAAACGGTTACAACAAAGAAGCATTGGCGGCTTTCAAAAACATGCTAACTGAAGATATTACAATCGATCAACATCTTCTTTGTAGTACATTTTCTGCTTGTGGACCTTTTAAAGCATACAACACAGGAAAATACTTTCATTCATTTATTACAAAGTTGGGATTTGAACAACATGTTTCTGTCATCAATGCACTTACAGACATGTACTGTAAACTAGGAGACATGGATAGTGGTTCAAGATT...

CDS

Download CDS FASTA

3357 bp · LXL04_018330|LXL04_018330|OH1004|CDS

ATGATTCACGTGTATGCAAAAAACGGTTACAACAAAGAAGCATTGGCGGCTTTCAAAAACATGCTAACTGAAGATATTACAATCGATCAACATCTTCTTTGTAGTACATTTTCTGCTTGTGGACCTTTTAAAGCATACAACACAGGAAAATACTTTCATTCATTTATTACAAAGTTGGGATTTGAACAACATGTTTCTGTCATCAATGCACTTACAGACATGTACTGTAAACTAGGAGACATGGATAGTGGTTCAAGATT...

Protein

Download Protein FASTA

1118 aa · LXL04_018330|LXL04_018330|OH1004|PROTEIN

MIHVYAKNGYNKEALAAFKNMLTEDITIDQHLLCSTFSACGPFKAYNTGKYFHSFITKLGFEQHVSVINALTDMYCKLGDMDSGSRFLNINSTGTNTITSIISYTSLIDGYVESDQIEKAFTIFIELKRQKVEPNEFTFSSLIKSCANHATLEQGVQLHALVLKHNLDQDPFVSSIIVDISGKLKETEIFIKNIPFEPNNYAWCSFLASCRKYNDKERGVLASKHLKILDPQNSGAHILLSNIYAKEQEWEHVRGVRKTM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018330
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018330
LocationChr04:11734035-11740142 (-)
DescriptionSimilar to PCMP-H42: Pentatricopeptide repeat-containing protein At4g13650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At4g14850 Acts as a regulatory factor of isoprenoid biosynthesis.
Lovastatin insensitive 1, a Novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis.2007 · DOI: 10.1093/pcp/pcm005
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018330 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.504
Rank 1 · LXL04_018330 · OH-1004
Cytoplasm0.269
Rank 2 · LXL04_018330 · OH-1004
Plastid0.104
Rank 3 · LXL04_018330 · OH-1004
Nucleus0.088
Rank 4 · LXL04_018330 · OH-1004
Peroxisome0.045
Rank 5 · LXL04_018330 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2100-148 aa
PF13812.13PPR_3100-148 aa
PF01535.27PPR102-130 aa
PF20431.5E_motif213-275 aa
PF14432.13DYW_deaminase311-399 aa
PF13041.13PPR_2503-550 aa
PF01535.27PPR505-530 aa
PF13041.13PPR_2604-640 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018330PF13041.13PPR_21001483e-74245.7
LXL04_018330PF13812.13PPR_31001488.4e-32109.8
LXL04_018330PF01535.27PPR1021309e-65211.2
LXL04_018330PF20431.5E_motif2132759.9e-43145.0
LXL04_018330PF14432.13DYW_deaminase3113993.4e-67223.0
LXL04_018330PF13041.13PPR_25035503e-74245.7
LXL04_018330PF01535.27PPR5055309e-65211.2
LXL04_018330PF13041.13PPR_26046403e-74245.7
LXL04_018330PF12854.14PPR_16046313.4e-36123.4
LXL04_018330PF01535.27PPR6066359e-65211.2
LXL04_018330PF13812.13PPR_37097588.4e-32109.8
LXL04_018330PF13041.13PPR_27107583e-74245.7
LXL04_018330PF01535.27PPR7127409e-65211.2
LXL04_018330PF29070.1MSC6_N8069086.7e-1659.1
LXL04_018330PF13041.13PPR_28118583e-74245.7
LXL04_018330PF13812.13PPR_38118578.4e-32109.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVP7Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1365036.788%Swiss-Protmoderate database homology
Q9SMZ2Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g3317037.130%Swiss-Protmoderate database homology
Q9S7F4Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At2g0151036.707%Swiss-Protmoderate database homology
Q0WSH6Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1485036.257%Swiss-Protmoderate database homology
Q9ZUW3Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g2761035.270%Swiss-Protmoderate database homology

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