Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1301 bp · LXL04_018315|LXL04_018315|OH1004|cDNA
ATGAATTACAAACTGAGGGACCTTCTGTCAAATAATGCACAAAGACCGGGGGAAGAAATCGTTTCATTCGCCATTACAATTCACAGCTTTTCCGTCGAGTAGGTGAAAATATGTCCGCTGCCGCCTGGACAATCGCCGGCGGCCATCCCCACCACTATCATCTTTCTTCTCACGGTGTCATCAACttctcttcatcatcttcctcaCGCTATCACCGCCGTAATTTTCCTATTATGGTTCGAAGCACATCCACAGTTAGA...
1191 bp · LXL04_018315|LXL04_018315|OH1004|CDS
ATGTCCGCTGCCGCCTGGACAATCGCCGGCGGCCATCCCCACCACTATCATCTTTCTTCTCACGGTGTCATCAACTTCTCTTCATCATCTTCCTCACGCTATCACCGCCGTAATTTTCCTATTATGGTTCGAAGCACATCCACAGTTAGACCTCTCTCTTTCATCCTTAATCGCAATTCTGTTGCTGCCGCTGTATCTTCAAGTAGTTCAACGAGAAATGTTAGCATTTCTATTACCAATGATAGCACTTTCACTTGGGA...
Protein
Download Protein FASTA396 aa · LXL04_018315|LXL04_018315|OH1004|PROTEIN
MSAAAWTIAGGHPHHYHLSSHGVINFSSSSSSRYHRRNFPIMVRSTSTVRPLSFILNRNSVAAAVSSSSSTRNVSISITNDSTFTWDDVLQISQPRNVPSDLSGFFQKISLCNRGWEMRSDFIPFVIEEQIVGYVHNGFLHHLSNFNDVFTFIKGDSYGSQSGHVTLQSALKTPEHRTEALENVIESLGEEVIPGIRNELYPVTSSHGEQVYFSLERAAAPYFGIKAYGVHMCGYVEKDGEKYLWVGKRSEMKPTYPGML...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018315 |
|---|---|
| TK1151 ID | TkA08G005980 |
| OH-1004 ID | LXL04_018315 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 91.455 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018315 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:11405793-11407967 (+) | |||||||||
| Description | Similar to NUDT20: Nudix hydrolase 20, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006772 thiamine metabolic process Biological Process GO:0009228 thiamine biosynthetic process Biological Process GO:0009229 thiamine diphosphate biosynthetic process Biological Process GO:0036172 thiamine salvage Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0004788 thiamine diphosphokinase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0016301 kinase activity Molecular Function GO:0030975 thiamine binding Molecular Function GO:0044715 8-oxo-dGDP phosphatase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G19460 ath:AT5G19470 sce:YJR142W spo:2543032 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15916.12DUF4743105-227 aaPF00293.35NUDIX237-346 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018315 | PF15916.12 | DUF4743 | 105 | 227 | 3.7e-33 | 114.7 |
| LXL04_018315 | PF00293.35 | NUDIX | 237 | 346 | 6.1e-06 | 27.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.