LXL04_018247 | RubberDandelionOmics

Gene overview

LXL04_018247

Reference: OH-1004 Chr: Chr04 Coordinates: 9470479-9474554 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3066 bp · LXL04_018247|LXL04_018247|OH1004|cDNA

ATGGCATGGTTAAGAGCTGGATCTACTGTAGCAAAACTCGCAATTAGGAGAACTGTAACACATGGCCGATCATACGCATCAAGACCACGCCTCCTTCCATCATCACACCACTCTCTCCACACCACAATCCCCAAATCAAAACCAGAACCCTCACCCATCCCTCGATCAGTCCCACTTTCCAAATTATCAGACAACTTCTTAGATGGAACCAGCAGTGTCTACCTGGAAGAAATGCAAAGAGCCTGGGAGGCCGACCCCAC...

CDS

Download CDS FASTA

3066 bp · LXL04_018247|LXL04_018247|OH1004|CDS

ATGGCATGGTTAAGAGCTGGATCTACTGTAGCAAAACTCGCAATTAGGAGAACTGTAACACATGGCCGATCATACGCATCAAGACCACGCCTCCTTCCATCATCACACCACTCTCTCCACACCACAATCCCCAAATCAAAACCAGAACCCTCACCCATCCCTCGATCAGTCCCACTTTCCAAATTATCAGACAACTTCTTAGATGGAACCAGCAGTGTCTACCTGGAAGAAATGCAAAGAGCCTGGGAGGCCGACCCCAC...

Protein

Download Protein FASTA

1021 aa · LXL04_018247|LXL04_018247|OH1004|PROTEIN

MAWLRAGSTVAKLAIRRTVTHGRSYASRPRLLPSSHHSLHTTIPKSKPEPSPIPRSVPLSKLSDNFLDGTSSVYLEEMQRAWEADPTSVDESWDNFFKNFVGQSAMSPSVSGQTIQESMRLLLLVRAYQVHGHMKAELDPLSLEQRDIPHDLDPNFYGFTESDLDREFFLGVWKMSGFLSENRPVQTLRAILTRLEQAYCGSIGYEYMHIANRDHCNWLRERIETPTPTQYSTKRREVILDRLIWGTQFENFLATKWTAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018247`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_018247`
Location	Chr04:9470479-9474554 (+)
Description	Similar to ogdh: 2-oxoglutarate dehydrogenase, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018247` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006091 generation of precursor metabolites and energy Biological Process GO:0006096 glycolytic process Biological Process GO:0006099 tricarboxylic acid cycle Biological Process GO:0006103 2-oxoglutarate metabolic process Biological Process GO:0006457 protein folding Biological Process GO:0045333 cellular respiration Biological Process GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0031966 mitochondrial membrane Cellular Component GO:0042645 mitochondrial nucleoid Cellular Component GO:0045252 oxoglutarate dehydrogenase complex Cellular Component GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity Molecular Function
KEGG gene cross-reference	cel:CELE_T22B11.5 ddi:DDB_G0288127 sce:YIL125W spo:2540991 vda:VDAG_10018 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.909

Rank 1 · LXL04_018247 · OH-1004

Cytoplasm0.083

Rank 2 · LXL04_018247 · OH-1004

Nucleus0.062

Rank 3 · LXL04_018247 · OH-1004

Peroxisome0.020

Rank 4 · LXL04_018247 · OH-1004

Cell membrane0.018

Rank 5 · LXL04_018247 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16078.112-oxogl_dehyd_N64-101 aa

PF00676.26E1_dh247-568 aa

PF02779.30Transket_pyr635-848 aa

PF16870.11OxoGdeHyase_C871-1012 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018247	`PF16078.11`	2-oxogl_dehyd_N	64	101	1.1e-14	54.3
LXL04_018247	`PF00676.26`	E1_dh	247	568	1.3e-59	202.4
LXL04_018247	`PF02779.30`	Transket_pyr	635	848	6.9e-49	166.6
LXL04_018247	`PF16870.11`	OxoGdeHyase_C	871	1012	5e-50	169.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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