LXL04_018103 | RubberDandelionOmics

Gene overview

LXL04_018103

Reference: OH-1004 Chr: Chr04 Coordinates: 6741489-6751153 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2583 bp · LXL04_018103|LXL04_018103|OH1004|cDNA

ATGTCAATTCGGAGGTGGATGTTTCTTCTTTTCGTCTTTGTTTCAATTAGATGTAGCGTAACTTTGTCTATTTCAGACCCGATCACTCAACAGAAATTGGACCAGGTTCCGAACCTGCCTGGTCAAAGTTTCATTGTCGACTTTGCACACTATGCTGGGTATGTAACTGTGAGTGAAGAATCTGGTAGAGCTCTGTTCTATTGGTTGACCGAAGCTGTTGACGATCCTGCTTCCAAGCCTCTTGTTCTTTGGCTCGGTGG...

CDS

Download CDS FASTA

2583 bp · LXL04_018103|LXL04_018103|OH1004|CDS

ATGTCAATTCGGAGGTGGATGTTTCTTCTTTTCGTCTTTGTTTCAATTAGATGTAGCGTAACTTTGTCTATTTCAGACCCGATCACTCAACAGAAATTGGACCAGGTTCCGAACCTGCCTGGTCAAAGTTTCATTGTCGACTTTGCACACTATGCTGGGTATGTAACTGTGAGTGAAGAATCTGGTAGAGCTCTGTTCTATTGGTTGACCGAAGCTGTTGACGATCCTGCTTCCAAGCCTCTTGTTCTTTGGCTCGGTGG...

Protein

Download Protein FASTA

860 aa · LXL04_018103|LXL04_018103|OH1004|PROTEIN

MSIRRWMFLLFVFVSIRCSVTLSISDPITQQKLDQVPNLPGQSFIVDFAHYAGYVTVSEESGRALFYWLTEAVDDPASKPLVLWLGGGPGCSSIGYGMAEEVGPFHVNKDGKSVYLNPYSWNTVANLLFLDSPAGVGFSYSNTTSDILTNGDKRTAADSLQFLLNWLERFPQFKGRDFYIAGESYAGHYVPQLSQAIVRYNKANTKSPINLKGYMVGNALTDDYSDHMGVFQFMWSAGMISDQTYKKSNELCDKESFIHP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018103`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018103

Location Chr04:6741489-6751153 (+)

Description Similar to CXP;2-2: Serine carboxypeptidase II-2 (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30810`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g07990`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g35780`	Probable carboxypeptidase.	No verified direct reference in this release
`At4g30610`	Active serine carboxypeptidase with broad substrate preference, including basic and hydrophilic groups.	BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana.2001 · DOI: 10.1073/pnas.091065998 Arabidopsis BRS1 is a secreted and active serine carboxypeptidase.2005 · DOI: 10.1074/jbc.m503299200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018103 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G07990

ath:AT4G30810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.479

Rank 1 · LXL04_018103 · OH-1004

Extracellular0.328

Rank 2 · LXL04_018103 · OH-1004

Cytoplasm0.144

Rank 3 · LXL04_018103 · OH-1004

Endoplasmic reticulum0.101

Rank 4 · LXL04_018103 · OH-1004

Cell membrane0.072

Rank 5 · LXL04_018103 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1040-347 aa

PF00450.29Peptidase_S10346-405 aa

PF00450.29Peptidase_S10437-741 aa

PF00450.29Peptidase_S10740-816 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018103	`PF00450.29`	Peptidase_S10	40	347	4.2e-254	844.1
LXL04_018103	`PF00450.29`	Peptidase_S10	346	405	4.2e-254	844.1
LXL04_018103	`PF00450.29`	Peptidase_S10	437	741	4.2e-254	844.1
LXL04_018103	`PF00450.29`	Peptidase_S10	740	816	4.2e-254	844.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q949Q7`	Arabidopsis thaliana	Serine carboxypeptidase-like 29	55.955%	Swiss-Prot	weak database homology
`Q9SFB5`	Arabidopsis thaliana	Serine carboxypeptidase-like 27	53.828%	Swiss-Prot	weak database homology
`Q9ZQQ0`	Arabidopsis thaliana	Serine carboxypeptidase-like 26	51.501%	Swiss-Prot	weak database homology
`Q9M099`	Arabidopsis thaliana	Serine carboxypeptidase 24	49.224%	Swiss-Prot	weak database homology

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