LXL04_018094 | RubberDandelionOmics

Gene overview

LXL04_018094

Reference: OH-1004 Chr: Chr04 Coordinates: 6580283-6584250 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_018094|LXL04_018094|OH1004|cDNA

ATGAAGAGGCGAGGAGGGAAGGGGAAGGGTGGAGCTGTAAACAGAGGTATTTCGTCAGAGTGTACGGACAAGATGGGGAAGGGAAGATCTGGCAAGCGATTGGTGAAGTACGATGAATTGCCGGAGTATTTGAAAGATAACGAGTTCATATTGGATTATTATAGATGCGAATGGCCGTTGAAGGATGTTATCGGTAGCGTAGTCTGTTGGCACAATGAAACCCTCAATATCTGGACGCATTTGGTAGGTTTCGTCATATT...

CDS

Download CDS FASTA

1107 bp · LXL04_018094|LXL04_018094|OH1004|CDS

ATGAAGAGGCGAGGAGGGAAGGGGAAGGGTGGAGCTGTAAACAGAGGTATTTCGTCAGAGTGTACGGACAAGATGGGGAAGGGAAGATCTGGCAAGCGATTGGTGAAGTACGATGAATTGCCGGAGTATTTGAAAGATAACGAGTTCATATTGGATTATTATAGATGCGAATGGCCGTTGAAGGATGTTATCGGTAGCGTAGTCTGTTGGCACAATGAAACCCTCAATATCTGGACGCATTTGGTAGGTTTCGTCATATT...

Protein

Download Protein FASTA

368 aa · LXL04_018094|LXL04_018094|OH1004|PROTEIN

MKRRGGKGKGGAVNRGISSECTDKMGKGRSGKRLVKYDELPEYLKDNEFILDYYRCEWPLKDVIGSVVCWHNETLNIWTHLVGFVIFLSLTIWSLLTKDKVESLIASFLSSTHGFLEPTMTTAMTKANGTVASILMPESLLGEILKPSIILINNPQNPNPKWPWFIFLTGAMSCLICSSISHLFACHSKTYNLFFWRLDYAGISLMIVSSFFAPIYYAFTCHPFSRLFYLSAITTLGLLAVFTLLSPALSAPRYRSFRAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018094`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018094

Location Chr04:6580283-6584250 (+)

Description Similar to HHP2: Heptahelical transmembrane protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30850`	May play a role in abiotic stress response.	No verified direct reference in this release
`At2g24150`	May play a role in abiotic stress response.	No verified direct reference in this release
`At5g20270`	May act as a negative regulator of abscisic acid (ABA)- mediated osmotic stress signaling and function in cross-talk between cold and osmotic signaling.	HHP1 is involved in osmotic stress sensitivity in Arabidopsis.2009 · DOI: 10.1093/jxb/erp039 HHP1, a novel signalling component in the cross-talk between the cold and osmotic signalling pathways in Arabidopsis.2010 · DOI: 10.1093/jxb/erq162
`At4g37680`	May play a role in abiotic stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0643700`	May play a role in abiotic stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018094 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009725 response to hormone Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

GO:0038023 signaling receptor activity Molecular Function

KEGG gene cross-reference

ath:AT2G24150

ath:AT4G30850

ath:AT4G37680

ath:AT5G20270

dosa:Os06g0643700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.714

Rank 1 · LXL04_018094 · OH-1004

Endoplasmic reticulum0.112

Rank 2 · LXL04_018094 · OH-1004

Cytoplasm0.102

Rank 3 · LXL04_018094 · OH-1004

Lysosome / Vacuole0.071

Rank 4 · LXL04_018094 · OH-1004

Golgi apparatus0.057

Rank 5 · LXL04_018094 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03006.27HlyIII70-341 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018094	`PF03006.27`	HlyIII	70	341	1.9e-64	218.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84N34`	Arabidopsis thaliana	Heptahelical transmembrane protein 2	56.198%	Swiss-Prot	strong database homology
`Q9ZUH8`	Arabidopsis thaliana	Heptahelical transmembrane protein 3	52.514%	Swiss-Prot	strong database homology
`Q93ZH9`	Arabidopsis thaliana	Heptahelical transmembrane protein 1	42.980%	Swiss-Prot	moderate database homology
`Q9SZG0`	Arabidopsis thaliana	Heptahelical transmembrane protein 4	39.257%	Swiss-Prot	moderate database homology
`B7F9G7`	Oryza sativa subsp. japonica	Heptahelical transmembrane protein ADIPOR1	48.185%	Swiss-Prot	moderate database homology

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