LXL04_018080 | RubberDandelionOmics

Gene overview

LXL04_018080

Reference: OH-1004 Chr: Chr04 Coordinates: 6256440-6259807 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1275 bp · LXL04_018080|LXL04_018080|OH1004|cDNA

ATGGCGTTGAAGTCTTTTGTAGAAGTTAAACTCGACTCACACTTCTCGATACATAACCTTCCATTCGGTGTTTTCAAGCATGGCGGAGACGATGCTGCTCCAAGGCCCGGAGTTGCAATTGGAGATTACGTTCTCGATCTCTCAGCAATTCATTCCGCCGGTTTGTTTGACGGACCATTTCTTTGCAATTCCGATTGTTTCCATCAgTCAAATCTTAACAAGTTTCTGGAGCTGGGAAGACCAGCATGGAAGGAAGCTCG...

CDS

Download CDS FASTA

1275 bp · LXL04_018080|LXL04_018080|OH1004|CDS

ATGGCGTTGAAGTCTTTTGTAGAAGTTAAACTCGACTCACACTTCTCGATACATAACCTTCCATTCGGTGTTTTCAAGCATGGCGGAGACGATGCTGCTCCAAGGCCCGGAGTTGCAATTGGAGATTACGTTCTCGATCTCTCAGCAATTCATTCCGCCGGTTTGTTTGACGGACCATTTCTTTGCAATTCCGATTGTTTCCATCAGTCAAATCTTAACAAGTTTCTGGAGCTGGGAAGACCAGCATGGAAGGAAGCTCG...

Protein

Download Protein FASTA

424 aa · LXL04_018080|LXL04_018080|OH1004|PROTEIN

MALKSFVEVKLDSHFSIHNLPFGVFKHGGDDAAPRPGVAIGDYVLDLSAIHSAGLFDGPFLCNSDCFHQSNLNKFLELGRPAWKEARSTLQKLLSCAIYDEPALQNNASLKQKALLPMGEVEMVLPIAIGDYTDFFSSKHHAKNCGLIFRGPENPVNPNWFHLPIAYHGRASSIVISGTDIIRPRGQGHPSGNSPPYFGPSRKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGVVLMNDWSARDIQAWEYVPLGPFLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018080`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018080

Location Chr04:6256440-6259807 (-)

Description Similar to FAH: Fumarylacetoacetase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12050`	Converts fumarylacetoacetate to acetoacetate and fumarate.	Disruption of fumarylacetoacetate hydrolase causes spontaneous cell death under short-day conditions in Arabidopsis.2013 · DOI: 10.1104/pp.113.216804 Sugar suppresses cell death caused by disruption of fumarylacetoacetate hydrolase in Arabidopsis.2016 · DOI: 10.1007/s00425-016-2530-6

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0196800`	Converts fumarylacetoacetate to acetoacetate and fumarate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018080 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006527 L-arginine catabolic process Biological Process

GO:0006559 L-phenylalanine catabolic process Biological Process

GO:0006572 L-tyrosine catabolic process Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:1902000 homogentisate catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0004334 fumarylacetoacetase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G12050

bta:508724

dosa:Os02g0196800

hsa:2184

osa:4328618

rno:29383

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.565

Rank 1 · LXL04_018080 · OH-1004

Nucleus0.357

Rank 2 · LXL04_018080 · OH-1004

Mitochondrion0.120

Rank 3 · LXL04_018080 · OH-1004

Peroxisome0.076

Rank 4 · LXL04_018080 · OH-1004

Plastid0.068

Rank 5 · LXL04_018080 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09298.17FAA_hydrolase_N18-126 aa

PF01557.24FAA_hydrolase134-401 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018080	`PF09298.17`	FAA_hydrolase_N	18	126	1.7e-32	112.4
LXL04_018080	`PF01557.24`	FAA_hydrolase	134	401	3.6e-40	138.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RW90`	Arabidopsis thaliana	Fumarylacetoacetase	76.303%	Swiss-Prot	strong database homology
`Q6H7M1`	Oryza sativa subsp. japonica	Fumarylacetoacetase	70.283%	Swiss-Prot	strong database homology

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