LXL04_018041 | RubberDandelionOmics

Gene overview

LXL04_018041

Reference: OH-1004 Chr: Chr04 Coordinates: 5462927-5463472 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

270 bp · LXL04_018041|LXL04_018041|OH1004|cDNA

ATGCtgaaaaggaagaagaagAGTTTCGGTAAAAGAGGATTAGGGGTGAAAGATTTGGTCGCACTTTCAGGGGCACACACTCTAGGGTTTTCACACTGTTCATCTTCTAGTGCTCGATTACACAATTTCAGCACTGCACACGTTTCCGATCCTAGCATTGAGAGTGAGTTCGCTATGAACTTGAAGAAGAAATGCCCCATCCATAACAAGGATCGCAATGCCGGAGAGTTCTTAGACTCAACTTCTTCAACCTTTGATAA...

CDS

Download CDS FASTA

270 bp · LXL04_018041|LXL04_018041|OH1004|CDS

ATGCTGAAAAGGAAGAAGAAGAGTTTCGGTAAAAGAGGATTAGGGGTGAAAGATTTGGTCGCACTTTCAGGGGCACACACTCTAGGGTTTTCACACTGTTCATCTTCTAGTGCTCGATTACACAATTTCAGCACTGCACACGTTTCCGATCCTAGCATTGAGAGTGAGTTCGCTATGAACTTGAAGAAGAAATGCCCCATCCATAACAAGGATCGCAATGCCGGAGAGTTCTTAGACTCAACTTCTTCAACCTTTGATAA...

Protein

Download Protein FASTA

89 aa · LXL04_018041|LXL04_018041|OH1004|PROTEIN

MLKRKKKSFGKRGLGVKDLVALSGAHTLGFSHCSSSSARLHNFSTAHVSDPSIESEFAMNLKKKCPIHNKDRNAGEFLDSTSSTFDNEY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018041`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018041

Location Chr04:5462927-5463472 (+)

Description Similar to PER66: Peroxidase 66

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51890`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g42180`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At2g18980`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g05260`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At3g21770`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018041 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009409 response to cold Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G05260

ath:AT2G18980

ath:AT3G21770

ath:AT5G42180

ath:AT5G51890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.875

Rank 1 · LXL04_018041 · OH-1004

Cytoplasm0.032

Rank 2 · LXL04_018041 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_018041 · OH-1004

Lysosome / Vacuole0.024

Rank 4 · LXL04_018041 · OH-1004

Endoplasmic reticulum0.024

Rank 5 · LXL04_018041 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase6-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018041	`PF00141.29`	peroxidase	6	89	1.5e-18	68.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LT91`	Arabidopsis thaliana	Peroxidase 66	61.905%	Swiss-Prot	strong database homology
`Q43872`	Arabidopsis thaliana	Peroxidase 64	50.000%	Swiss-Prot	strong database homology
`Q96518`	Arabidopsis thaliana	Peroxidase 16	41.975%	Swiss-Prot	moderate database homology
`O23044`	Arabidopsis thaliana	Peroxidase 3	48.780%	Swiss-Prot	moderate database homology
`Q9LSY7`	Arabidopsis thaliana	Peroxidase 30	48.235%	Swiss-Prot	moderate database homology

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