LXL04_017988 | RubberDandelionOmics

Gene overview

LXL04_017988

Reference: OH-1004 Chr: Chr04 Coordinates: 4687295-4695936 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1293 bp · LXL04_017988|LXL04_017988|OH1004|cDNA

ATGCGTCGCCTACTTCAAGAAGATTCACTCCATCAAGACAAATTACCTATGAAGCATCACACATTGGGCGTATTCTTGATCATCGGGGGGTTAATCTTGTTCCTAATTTTGCTGATTATTATATTTGCCTTCCGAAAATCAATCCAAACATATCAGCTAGGGAGGTGTGTAAAACGTAAAGACAGCTGTAAAGCCGCAAAAGACTATTTTACCGGGAAACTCCAGTCAATTAGCTATTTTAGTTTTCGAACATTAAAGGA...

CDS

Download CDS FASTA

1293 bp · LXL04_017988|LXL04_017988|OH1004|CDS

ATGCGTCGCCTACTTCAAGAAGATTCACTCCATCAAGACAAATTACCTATGAAGCATCACACATTGGGCGTATTCTTGATCATCGGGGGGTTAATCTTGTTCCTAATTTTGCTGATTATTATATTTGCCTTCCGAAAATCAATCCAAACATATCAGCTAGGGAGGTGTGTAAAACGTAAAGACAGCTGTAAAGCCGCAAAAGACTATTTTACCGGGAAACTCCAGTCAATTAGCTATTTTAGTTTTCGAACATTAAAGGA...

Protein

Download Protein FASTA

430 aa · LXL04_017988|LXL04_017988|OH1004|PROTEIN

MRRLLQEDSLHQDKLPMKHHTLGVFLIIGGLILFLILLIIIFAFRKSIQTYQLGRCVKRKDSCKAAKDYFTGKLQSISYFSFRTLKEASKNFDERNLLGEGGFGPVYLGKLQDGRLVAIKKLSLKKSQQGEEEFLAEVRMITSIQHKNLLRLLGCCSEGPQRVLVYEYMKNRSLDLIIYGKSNEYLNWNMRFQIILGIARGLQYLHEESHIRIVHRDIKASNILLDGNFQPRIGDFGLARFFPENQAYLSATLAGYTAPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017988`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017988

Location Chr04:4687295-4695936 (+)

Description Similar to At1g56140: Probable LRR receptor-like serine/threonine-protein kinase At1g56140

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At1g16670`	Negative regulator of freezing tolerance that phosphorylates 14-3-3 proteins (e.g. GRF6) thus triggering their translocation from the cytosol to the nucleus in response to cold stress.	No verified direct reference in this release
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_017988 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0009409 response to cold Biological Process

GO:0009625 response to insect Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050826 response to freezing Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G16670

ath:AT1G53430

ath:AT1G56130

ath:AT1G56140

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.790

Rank 1 · LXL04_017988 · OH-1004

Cytoplasm0.132

Rank 2 · LXL04_017988 · OH-1004

Endoplasmic reticulum0.082

Rank 3 · LXL04_017988 · OH-1004

Nucleus0.081

Rank 4 · LXL04_017988 · OH-1004

Golgi apparatus0.034

Rank 5 · LXL04_017988 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase94-291 aa

PF07714.24PK_Tyr_Ser-Thr96-360 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017988	`PF00069.32`	Pkinase	94	291	1.7e-41	143.1
LXL04_017988	`PF07714.24`	PK_Tyr_Ser-Thr	96	360	3.3e-45	155.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`C0LGH3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	45.225%	Swiss-Prot	moderate database homology
`C0LGH2`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	44.818%	Swiss-Prot	moderate database homology
`Q93YN1`	Arabidopsis thaliana	Cold-responsive protein kinase 1	48.136%	Swiss-Prot	moderate database homology
`C0LGE0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	42.703%	Swiss-Prot	moderate database homology
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	39.268%	Swiss-Prot	moderate database homology

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