LXL04_017941 | RubberDandelionOmics

Gene overview

LXL04_017941

Reference: OH-1004 Chr: Chr04 Coordinates: 4029777-4034120 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1383 bp · LXL04_017941|LXL04_017941|OH1004|cDNA

ATGGGTTCATGTGGGATTTTCTCAGTGACTGTAAAACAGAGAGAGATCATCACCGCCGCATTACCTGTGCAAGATTACTGGCTTCAGATGTCGAATTTGGACCTACTCCTTCCGCCATTGGACGTCGGAGTTTTCTTCTGTTACAAGAATTCTCTTCCCCATGAAGGTGAGAGTGTGAAGATAATCAAGAAATCGTTAGCGCAAGTTCTATCTCCATTTTACCCGTTCGCCGGTGAAGTTGTTCAGAATAAAGACGGTGA...

CDS

Download CDS FASTA

1383 bp · LXL04_017941|LXL04_017941|OH1004|CDS

ATGGGTTCATGTGGGATTTTCTCAGTGACTGTAAAACAGAGAGAGATCATCACCGCCGCATTACCTGTGCAAGATTACTGGCTTCAGATGTCGAATTTGGACCTACTCCTTCCGCCATTGGACGTCGGAGTTTTCTTCTGTTACAAGAATTCTCTTCCCCATGAAGGTGAGAGTGTGAAGATAATCAAGAAATCGTTAGCGCAAGTTCTATCTCCATTTTACCCGTTCGCCGGTGAAGTTGTTCAGAATAAAGACGGTGA...

Protein

Download Protein FASTA

460 aa · LXL04_017941|LXL04_017941|OH1004|PROTEIN

MGSCGIFSVTVKQREIITAALPVQDYWLQMSNLDLLLPPLDVGVFFCYKNSLPHEGESVKIIKKSLAQVLSPFYPFAGEVVQNKDGEPELVCNNGGVDFIHAYADMELKEIDLYHPDDSVERKLVPTKKRGVLSVQVTELNCGGLVIGCTFDHRIADAYSINMFLTAWAEITQSKQISCLPTFRRSMLNPRRPPIMNTFYNTLFVPLSSLPPPRSYFPSEPLLSRIYYIQAKDINDLQSNSSFNGNPKRSKFVAFTAFLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017941`
TK1151 ID	TkA08G038400
OH-1004 ID	LXL04_017941
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017941

Location Chr04:4029777-4034120 (-)

Description Similar to HHT1: Omega-hydroxypalmitate O-feruloyl transferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41040`	Involved in the synthesis of aromatics of the suberin polymer.	Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis.2009 · DOI: 10.1104/pp.109.144907 A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis.2009 · DOI: 10.1073/pnas.0905555106

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0500700`	Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to various acyl acceptors.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017941 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0052325 cell wall pectin biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0034318 alcohol O-acyltransferase activity Molecular Function

GO:0047172 shikimate O-hydroxycinnamoyltransferase activity Molecular Function

GO:0050266 rosmarinate synthase activity Molecular Function

KEGG gene cross-reference

ag:ABG75942

ath:AT5G41040

dosa:Os04g0500700

nta:107796658

osa:4336306

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.579

Rank 1 · LXL04_017941 · OH-1004

Nucleus0.281

Rank 2 · LXL04_017941 · OH-1004

Endoplasmic reticulum0.114

Rank 3 · LXL04_017941 · OH-1004

Cell membrane0.093

Rank 4 · LXL04_017941 · OH-1004

Lysosome / Vacuole0.067

Rank 5 · LXL04_017941 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458.21Transferase7-445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017941	`PF02458.21`	Transferase	7	445	1.9e-98	330.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94CD1`	Arabidopsis thaliana	Omega-hydroxypalmitate O-feruloyl transferase	27.062%	Swiss-Prot	weak database homology
`Q0JBZ8`	Oryza sativa subsp. japonica	Hydroxycinnamoyltransferase 1	24.946%	Swiss-Prot	weak database homology

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