Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1569 bp · LXL04_017911|LXL04_017911|OH1004|cDNA
ATGGTTGGGAGTGGTATAGCGGAGGTGATCAGTAGCAATGGTTGTTCAAAGATGTATTCGGATATAAATTGCACATTTGATACTAATTCTTCCAAAGATCTTCAACTTCCACGTTGTTCTCTTCATCGTTCTTCCTCAAATTCCCCGTTTTCTGGTCTTGTTATTTGTGTTACTGGTCTATCAAAAGAAGCAAGAAAACAAGTGACGGATGCAACTGAGAGATTAGGTGGTCAATTCAGTCCCCATTTGAATCCAAAGTG...
1569 bp · LXL04_017911|LXL04_017911|OH1004|CDS
ATGGTTGGGAGTGGTATAGCGGAGGTGATCAGTAGCAATGGTTGTTCAAAGATGTATTCGGATATAAATTGCACATTTGATACTAATTCTTCCAAAGATCTTCAACTTCCACGTTGTTCTCTTCATCGTTCTTCCTCAAATTCCCCGTTTTCTGGTCTTGTTATTTGTGTTACTGGTCTATCAAAAGAAGCAAGAAAACAAGTGACGGATGCAACTGAGAGATTAGGTGGTCAATTCAGTCCCCATTTGAATCCAAAGTG...
Protein
Download Protein FASTA522 aa · LXL04_017911|LXL04_017911|OH1004|PROTEIN
MVGSGIAEVISSNGCSKMYSDINCTFDTNSSKDLQLPRCSLHRSSSNSPFSGLVICVTGLSKEARKQVTDATERLGGQFSPHLNPKCTHLVVQISFSTLRYIVLLSNLTSIYNSHERKSEYASKHGLFMVTLGWFVDSVTKNVRLNESLYEVKTLGESYMAKDDLKRISNASSCNPNSMLDNVKQSNLIQRSRLHLREHKRRSGSIFLGQTMYIDPDVTVELRNKVMEAVREEGGLVVTEWLTGQNTTHVVCEGSSVRKY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017911 |
|---|---|
| TK1151 ID | TkA08G040930 |
| OH-1004 ID | LXL04_017911 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017911 |
|---|---|
| Location | Chr04:3484512-3487665 (+) |
| Description | Similar to Topbp1: DNA topoisomerase 2-binding protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000076 DNA replication checkpoint signaling Biological Process GO:0000077 DNA damage checkpoint signaling Biological Process GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006259 DNA metabolic process Biological Process GO:0006270 DNA replication initiation Biological Process GO:0006281 DNA repair Biological Process GO:0006302 double-strand break repair Biological Process GO:0006974 DNA damage response Biological Process GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process GO:0007131 reciprocal meiotic recombination Biological Process GO:0010212 response to ionizing radiation Biological Process GO:0033314 mitotic DNA replication checkpoint signaling Biological Process |
| KEGG gene cross-reference | hsa:11073 mmu:235559 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00533.34BRCT47-138 aaPF12738.14PTCB-BRCT53-93 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017911 | PF00533.34 | BRCT | 47 | 138 | 1.3e-12 | 48.5 |
| LXL04_017911 | PF12738.14 | PTCB-BRCT | 53 | 93 | 5.2e-14 | 52.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.