Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1653 bp · LXL04_017888|LXL04_017888|OH1004|cDNA
ATGGCAAAGCTTATAGCACTCGCACTCGCCTTCTCCGCCTTTGTAGCCTTGGCTTCCGCCCAAACCACCATCTTCACCACCACAATCGAGGACGACAACCCAGTCTCCAGGCAGCAATGCAGCCGACGGATCCAGGGAGAAAGATTCAATCAGTGCCAGAGGTACCTCCAGCAAGGCCAGAGCTGGTATGAAGAAGACAACCGGAGTCAAATGCAGGGCGGCCAGCTCCAGTCTTGCTGCCAAGAGCTCCAAAACGTGGA...
1653 bp · LXL04_017888|LXL04_017888|OH1004|CDS
ATGGCAAAGCTTATAGCACTCGCACTCGCCTTCTCCGCCTTTGTAGCCTTGGCTTCCGCCCAAACCACCATCTTCACCACCACAATCGAGGACGACAACCCAGTCTCCAGGCAGCAATGCAGCCGACGGATCCAGGGAGAAAGATTCAATCAGTGCCAGAGGTACCTCCAGCAAGGCCAGAGCTGGTATGAAGAAGACAACCGGAGTCAAATGCAGGGCGGCCAGCTCCAGTCTTGCTGCCAAGAGCTCCAAAACGTGGA...
Protein
Download Protein FASTA550 aa · LXL04_017888|LXL04_017888|OH1004|PROTEIN
MAKLIALALAFSAFVALASAQTTIFTTTIEDDNPVSRQQCSRRIQGERFNQCQRYLQQGQSWYEEDNRSQMQGGQLQSCCQELQNVEEQCQCEAVKEAFRQAQRMQQQQQGQQDGSYGSQQIRQMKQKAQNLPNQCQLQTKQCQVGSITFTSTTTIPEEDTRGSQMCQHIRGRRFNQCQDYVERQLSGYSGSTLLMSVSRKQSQGVEQCCNELQNVEEECQCEAMKEVYRQTQQMQQQQQGRRQQGGRQFQSQDVQQIVQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017888 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017888 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr04:2905954-2910593 (+) | ||||||
| Description | Similar to HAG5: 2S seed storage protein | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0002229 defense response to oomycetes Biological Process GO:0031640 killing of cells of another organism Biological Process GO:0050832 defense response to fungus Biological Process GO:0045735 nutrient reservoir activity Molecular Function | ||||||
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00234.28Tryp_alpha_amyl51-143 aaPF00234.28Tryp_alpha_amyl198-273 aaPF00234.28Tryp_alpha_amyl344-413 aaPF00234.28Tryp_alpha_amyl468-543 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017888 | PF00234.28 | Tryp_alpha_amyl | 51 | 143 | 5.6e-24 | 84.9 |
| LXL04_017888 | PF00234.28 | Tryp_alpha_amyl | 198 | 273 | 5.6e-24 | 84.9 |
| LXL04_017888 | PF00234.28 | Tryp_alpha_amyl | 344 | 413 | 5.6e-24 | 84.9 |
| LXL04_017888 | PF00234.28 | Tryp_alpha_amyl | 468 | 543 | 5.6e-24 | 84.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9FH31 | Arabidopsis thaliana | 2S seed storage protein 5 | 31.250% | Swiss-Prot | weak database homology |