LXL04_017871 | RubberDandelionOmics

Gene overview

LXL04_017871

Reference: OH-1004 Chr: Chr04 Coordinates: 2553655-2556169 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1536 bp · LXL04_017871|LXL04_017871|OH1004|cDNA

ATGGCGCCTGGCGTAATCAACGGTGGGAGTAGCTCCGGTGGCACCGGTGAGCACTTACCAGCCAAGCTCACCTTGCAAGTGCTTGTATGCTCCATCATTGCTGCCTTCGGTGGCCTCATGTTTGGTTATGACATCGGCATTTCAGGAGGTGTGACATCTATGGACGTGTTCTTGGAGAAGTTTTTTCCACATGTATACGTAAAAAAGCACCATGCAAGAGAAGATAATTACTGTAAATTCGATGATCAATTCCTCCAGCT...

CDS

Download CDS FASTA

1536 bp · LXL04_017871|LXL04_017871|OH1004|CDS

ATGGCGCCTGGCGTAATCAACGGTGGGAGTAGCTCCGGTGGCACCGGTGAGCACTTACCAGCCAAGCTCACCTTGCAAGTGCTTGTATGCTCCATCATTGCTGCCTTCGGTGGCCTCATGTTTGGTTATGACATCGGCATTTCAGGAGGTGTGACATCTATGGACGTGTTCTTGGAGAAGTTTTTTCCACATGTATACGTAAAAAAGCACCATGCAAGAGAAGATAATTACTGTAAATTCGATGATCAATTCCTCCAGCT...

Protein

Download Protein FASTA

511 aa · LXL04_017871|LXL04_017871|OH1004|PROTEIN

MAPGVINGGSSSGGTGEHLPAKLTLQVLVCSIIAAFGGLMFGYDIGISGGVTSMDVFLEKFFPHVYVKKHHAREDNYCKFDDQFLQLFTSSLYLAAVVCSLFASKCCKRFGRKVTIQLASLFFLGGVVLTACAVNLAMLIFGRLFLGAGVGFGNQAVPLFISEIAPAKYRGGLNVCFQLLVTVGILCASVVNYFTSTHPFGWRISLGGAAIPALFLAVGSLLIVETPTSLIERGQPEEGMRTLRKIRGVQDVQKEYDEIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017871`
TK1151 ID	TkA08G044320
OH-1004 ID	LXL04_017871
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017871

Location Chr04:2553655-2556169 (-)

Description Similar to STP8: Sugar transport protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g26250`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	No verified direct reference in this release
`At3g05960`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	AtSTP6, a new pollen-specific H+-monosaccharide symporter from Arabidopsis.2003 · DOI: 10.1104/pp.012666
`At5g26340`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	No verified direct reference in this release
`At1g07340`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	A male gametophyte-specific monosaccharide transporter in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00372.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0218400`	Mediates active uptake of hexoses by sugar:proton symport (Probable).	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.).2007 · DOI: 10.1007/s11103-007-9228-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017871 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0015749 monosaccharide transmembrane transport Biological Process

GO:0034219 carbohydrate transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G07340

ath:AT3G05960

ath:AT5G26250

ath:AT5G26340

dosa:Os03g0218400

osa:4332079

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.848

Rank 1 · LXL04_017871 · OH-1004

Cytoplasm0.114

Rank 2 · LXL04_017871 · OH-1004

Endoplasmic reticulum0.043

Rank 3 · LXL04_017871 · OH-1004

Mitochondrion0.037

Rank 4 · LXL04_017871 · OH-1004

Lysosome / Vacuole0.031

Rank 5 · LXL04_017871 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr31-485 aa

PF07690.22MFS_180-437 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017871	`PF00083.31`	Sugar_tr	31	485	1.1e-115	387.9
LXL04_017871	`PF07690.22`	MFS_1	80	437	2.6e-23	83.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SBA7`	Arabidopsis thaliana	Sugar transport protein 8	65.932%	Swiss-Prot	strong database homology
`Q9SFG0`	Arabidopsis thaliana	Sugar transport protein 6	64.400%	Swiss-Prot	strong database homology
`Q94AZ2`	Arabidopsis thaliana	Sugar transport protein 13	57.058%	Swiss-Prot	strong database homology
`Q9LNV3`	Arabidopsis thaliana	Sugar transport protein 2	61.905%	Swiss-Prot	strong database homology
`Q10PW9`	Oryza sativa subsp. japonica	Sugar transport protein MST4	58.465%	Swiss-Prot	strong database homology

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