LXL04_017836 | RubberDandelionOmics

Gene overview

LXL04_017836

Reference: OH-1004 Chr: Chr04 Coordinates: 2112203-2118655 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1488 bp · LXL04_017836|LXL04_017836|OH1004|cDNA

ATGCTCCCTTCATCCACCTCAATCGTATCACTGCCTACCAATTATACTCCACCTCCGCCGCCACAACCTCTTCTTTCCCTTCTGCCGTTGCTTTTCTTGTTGATACTTGTATTTAAAATCTTACGGAGGAGCCACCACCGGACACAACGGGAGAAACTCCGGCTACCGCCAGGTTCAATGGGTTGGCCTTACATAGGTGAAACACTCAAGCTCTTCACTGAAAACCCAAATTCCTTCTTCTCCAACCGTGAAAAAAGGTA...

CDS

Download CDS FASTA

1488 bp · LXL04_017836|LXL04_017836|OH1004|CDS

ATGCTCCCTTCATCCACCTCAATCGTATCACTGCCTACCAATTATACTCCACCTCCGCCGCCACAACCTCTTCTTTCCCTTCTGCCGTTGCTTTTCTTGTTGATACTTGTATTTAAAATCTTACGGAGGAGCCACCACCGGACACAACGGGAGAAACTCCGGCTACCGCCAGGTTCAATGGGTTGGCCTTACATAGGTGAAACACTCAAGCTCTTCACTGAAAACCCAAATTCCTTCTTCTCCAACCGTGAAAAAAGGTA...

Protein

Download Protein FASTA

495 aa · LXL04_017836|LXL04_017836|OH1004|PROTEIN

MLPSSTSIVSLPTNYTPPPPPQPLLSLLPLLFLLILVFKILRRSHHRTQREKLRLPPGSMGWPYIGETLKLFTENPNSFFSNREKRYGKIFKTHILGCPCVMISSPKVAKIVLVTQSHMFKPTYPPSKEKMIGPEAIFFHQGPYHSHLKKLIQSSFLPSAIKGSVSQIEDIVLGFLPTWEHDNTINTLHEMKKYAFEVAMISVFGNKSEADMEGIKPLYQCLEKGYNSMPLDLPGTRFNKAMKARKALNEKLRRMIEKRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017836`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_017836

Location Chr04:2112203-2118655 (-)

Description Similar to CYP707A2: Abscisic acid 8'-hydroxylase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29090`	Participates in ABA oxidative degradation but does not catalyze the isomerization of 8′-hydroxy-ABA to (−)-phaseic acid.	The Arabidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolism.2004 · DOI: 10.1038/sj.emboj.7600121 CYP707A1 and CYP707A2, which encode abscisic acid 8'-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis.2006 · DOI: 10.1104/pp.106.079475
`At4g19230`	Involved in the oxidative degradation of abscisic acid.	The Arabidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolism.2004 · DOI: 10.1038/sj.emboj.7600121 Arabidopsis CYP707As encode (+)-abscisic acid 8'-hydroxylase, a key enzyme in the oxidative catabolism of abscisic acid.2004 · DOI: 10.1104/pp.103.037614 CYP707A1 and CYP707A2, which encode abscisic acid 8'-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis.2006 · DOI: 10.1104/pp.106.079475
`At5g45340`	Participates in ABA oxidative degradation but does not catalyze the isomerization of 8′-hydroxy-ABA to (−)-phaseic acid.	Arabidopsis CYP707As encode (+)-abscisic acid 8'-hydroxylase, a key enzyme in the oxidative catabolism of abscisic acid.2004 · DOI: 10.1104/pp.103.037614 CYP707A3, a major ABA 8'-hydroxylase involved in dehydration and rehydration response in Arabidopsis thaliana.2006 · DOI: 10.1111/j.1365-313x.2006.02683.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017836 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0009687 abscisic acid metabolic process Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009835 fruit ripening Biological Process

GO:0009856 pollination Biological Process

GO:0010114 response to red light Biological Process

GO:0046345 abscisic acid catabolic process Biological Process

GO:0048838 release of seed from dormancy Biological Process

GO:0050832 defense response to fungus Biological Process

KEGG gene cross-reference

ath:AT2G29090

ath:AT4G19230

ath:AT5G45340

sly:100136887

sly:101249565

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.840

Rank 1 · LXL04_017836 · OH-1004

Golgi apparatus0.100

Rank 2 · LXL04_017836 · OH-1004

Nucleus0.044

Rank 3 · LXL04_017836 · OH-1004

Cytoplasm0.039

Rank 4 · LXL04_017836 · OH-1004

Cell membrane0.035

Rank 5 · LXL04_017836 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45056-457 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017836	`PF00067.28`	p450	56	457	2.9e-73	247.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81077`	Arabidopsis thaliana	Abscisic acid 8'-hydroxylase 2	70.429%	Swiss-Prot	strong database homology
`Q949P1`	Arabidopsis thaliana	Abscisic acid 8'-hydroxylase 1	58.462%	Swiss-Prot	strong database homology
`Q9FH76`	Arabidopsis thaliana	Abscisic acid 8'-hydroxylase 3	57.918%	Swiss-Prot	strong database homology

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