LXL04_017800 | RubberDandelionOmics

Gene overview

LXL04_017800

Reference: OH-1004 Chr: Chr04 Coordinates: 1365366-1368215 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2094 bp · LXL04_017800|LXL04_017800|OH1004|cDNA

ATGGGAAACGGAGTCGGCAAGCTGACAATCTGTTTCACAGGAGCCGACATCGCCCACCGCCGGAATAACTTAGCTCTAGTTATCTCCGACCCACTAGACGATCTAGGTCACTCCTTTTGCTATGTAAGACCTGATCAATCTTGCATTTCGTCCTCCAAAGTCCATTCCGCTGAAGAAACGACAACGTTTCGGTCAATCTCCGGCGCCTCCGTCTCCGCAAACACGTCCACGCCTCTATCTACCTCTTTCCTCGACGTTTA...

CDS

Download CDS FASTA

2094 bp · LXL04_017800|LXL04_017800|OH1004|CDS

ATGGGAAACGGAGTCGGCAAGCTGACAATCTGTTTCACAGGAGCCGACATCGCCCACCGCCGGAATAACTTAGCTCTAGTTATCTCCGACCCACTAGACGATCTAGGTCACTCCTTTTGCTATGTAAGACCTGATCAATCTTGCATTTCGTCCTCCAAAGTCCATTCCGCTGAAGAAACGACAACGTTTCGGTCAATCTCCGGCGCCTCCGTCTCCGCAAACACGTCCACGCCTCTATCTACCTCTTTCCTCGACGTTTA...

Protein

Download Protein FASTA

697 aa · LXL04_017800|LXL04_017800|OH1004|PROTEIN

MGNGVGKLTICFTGADIAHRRNNLALVISDPLDDLGHSFCYVRPDQSCISSSKVHSAEETTTFRSISGASVSANTSTPLSTSFLDVYSYNACDKASAFESSTSFASVPLQPLPRSSINSGPLPFGPGAYSGPIERGFVSGPIERGFQSGPLFSGPLEKGNPDQFQRSYSHGGFAFKRRSRKKHLIRVIQKAISRTFTTRGQNSSVAPIIKNVGHLKDHDWTVGSAEKNNELTISSINLSSEGSILDDDDCLNQSQNLQWA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017800`
TK1151 ID	TkA08G050360
OH-1004 ID	LXL04_017800
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_017800

Location Chr04:1365366-1368215 (-)

Description Similar to PLL4: Probable protein phosphatase 2C 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28890`	Involved in leaf development regulation.	POL and related phosphatases are dosage-sensitive regulators of meristem and organ development in Arabidopsis.2005 · DOI: 10.1016/j.ydbio.2005.06.020
`At1g07630`	Involved in leaf development regulation.	POL and related phosphatases are dosage-sensitive regulators of meristem and organ development in Arabidopsis.2005 · DOI: 10.1016/j.ydbio.2005.06.020
`At5g02400`	Probable protein phosphatase 2C 66.	No verified direct reference in this release
`At3g09400`	Probable protein phosphatase 2C 36.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0821300`	Protein phosphatase that acts on XA21 pathogen recognition receptor.	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity.2008 · DOI: 10.1371/journal.pbio.0060231

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017800 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0048366 leaf development Biological Process

GO:0048827 phyllome development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G07630

ath:AT2G28890

ath:AT3G09400

ath:AT5G02400

dosa:Os03g0821300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.312

Rank 1 · LXL04_017800 · OH-1004

Nucleus0.277

Rank 2 · LXL04_017800 · OH-1004

Cell membrane0.226

Rank 3 · LXL04_017800 · OH-1004

Plastid0.136

Rank 4 · LXL04_017800 · OH-1004

Golgi apparatus0.092

Rank 5 · LXL04_017800 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C421-654 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017800	`PF00481.27`	PP2C	421	654	1.2e-29	104.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZV25`	Arabidopsis thaliana	Probable protein phosphatase 2C 23	63.254%	Swiss-Prot	strong database homology
`Q9LQN6`	Arabidopsis thaliana	Probable protein phosphatase 2C 4	63.158%	Swiss-Prot	strong database homology
`Q9LZ86`	Arabidopsis thaliana	Probable protein phosphatase 2C 66	51.105%	Swiss-Prot	strong database homology
`Q9SR24`	Arabidopsis thaliana	Probable protein phosphatase 2C 36	48.333%	Swiss-Prot	moderate database homology
`Q84T94`	Oryza sativa subsp. japonica	Protein phosphatase 2C 35	52.230%	Swiss-Prot	strong database homology

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