Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1779 bp · LXL04_017760|LXL04_017760|OH1004|cDNA
ATGTCAGGCCGTGGAAAGGGAGGAAAGGGGCTCGGAAAGGGAGGAGCCAAGCGACACAGGAAGGTTCTCCGTGACAACATCCAGGGAATAACCAAGCCCGCCATTCGCAGATTGGCTCGTCGTGGAGGTGTCAAGCGTATCAGCGGCTTGATCTACGAGGAAACTCGCGGTGTTCTTAAGATCTTTCTAGAGAATGTCATCAGAGATGCTGTTACCTACACCGAGCACGCTCGCCGCAAAACTGTTACCGCCATGGACGT...
1779 bp · LXL04_017760|LXL04_017760|OH1004|CDS
ATGTCAGGCCGTGGAAAGGGAGGAAAGGGGCTCGGAAAGGGAGGAGCCAAGCGACACAGGAAGGTTCTCCGTGACAACATCCAGGGAATAACCAAGCCCGCCATTCGCAGATTGGCTCGTCGTGGAGGTGTCAAGCGTATCAGCGGCTTGATCTACGAGGAAACTCGCGGTGTTCTTAAGATCTTTCTAGAGAATGTCATCAGAGATGCTGTTACCTACACCGAGCACGCTCGCCGCAAAACTGTTACCGCCATGGACGT...
Protein
Download Protein FASTA592 aa · LXL04_017760|LXL04_017760|OH1004|PROTEIN
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGAVIKTKFIAFFHGVTNLGADCLLSFNIVVGSLSLRKSIKLAKYFTHRDVTPALSRGDSGCWSFQAAGAVPDIGMPSDDAVVIQKGKKQGDPFVITVNCPDKTGLGCDICWIILDFGLYIVKGDFTTDGIWCYIVLWVFPHPTSPTVRWSALKDRLLSI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017760 |
|---|---|
| TK1151 ID | TkA08G052500 |
| OH-1004 ID | LXL04_017760 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 97.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 70.439Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017760 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:847112-849930 (-) | |||||||||
| Description | Similar to ACR9: ACT domain-containing protein ACR9 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006334 nucleosome assembly Biological Process GO:0000786 nucleosome Cellular Component GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0030527 structural constituent of chromatin Molecular Function GO:0046982 protein heterodimerization activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G36840 ath:AT2G39570 gmx:100305586 gmx:100777359 gmx:100778317 gmx:100779597 gmx:100784085 gmx:100784197 gmx:100788767 gmx:100793106 gmx:100799680 gmx:100800769 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15511.13CENP-T_C45-96 aaPF24914.2ACR10_N184-262 aaPF01842.32ACT285-344 aaPF24931.2ACT_ACR9_3rd412-509 aaPF24926.2ACT_ACR9_C510-591 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017760 | PF15511.13 | CENP-T_C | 45 | 96 | 5.4e-07 | 30.4 |
| LXL04_017760 | PF24914.2 | ACR10_N | 184 | 262 | 1.6e-49 | 165.9 |
| LXL04_017760 | PF01842.32 | ACT | 285 | 344 | 1.1e-08 | 35.4 |
| LXL04_017760 | PF24931.2 | ACT_ACR9_3rd | 412 | 509 | 6.9e-51 | 171.1 |
| LXL04_017760 | PF24926.2 | ACT_ACR9_C | 510 | 591 | 1.3e-35 | 121.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.