Gene Card
Gene overview
cDNA / CDS / Protein Sequences
663 bp · LXL04_017747|LXL04_017747|OH1004|cDNA
ATGGCGCGTCTCTCAAATTTCTATCTCTTCTTTTACAATTCCGTTCAAGCTCTAGGATGGGCAATTGCTTTGTTTAGAATTGTAATTGACTTCGTATCCACGAAATCGGTCAACAACGCGTATGCTTCTGCTGGAGATCTGATTTGCTTGCTACAAACTATTGGATTCATAGAAGTGTTACATGGAGCTGTAGGTATTGTTCCTAGTGGATTTCTCTTTCCTCTAATGCAATGGGGAGGAAGGACACATTTCCTTCTTGC...
663 bp · LXL04_017747|LXL04_017747|OH1004|CDS
ATGGCGCGTCTCTCAAATTTCTATCTCTTCTTTTACAATTCCGTTCAAGCTCTAGGATGGGCAATTGCTTTGTTTAGAATTGTAATTGACTTCGTATCCACGAAATCGGTCAACAACGCGTATGCTTCTGCTGGAGATCTGATTTGCTTGCTACAAACTATTGGATTCATAGAAGTGTTACATGGAGCTGTAGGTATTGTTCCTAGTGGATTTCTCTTTCCTCTAATGCAATGGGGAGGAAGGACACATTTCCTTCTTGC...
Protein
Download Protein FASTA220 aa · LXL04_017747|LXL04_017747|OH1004|PROTEIN
MARLSNFYLFFYNSVQALGWAIALFRIVIDFVSTKSVNNAYASAGDLICLLQTIGFIEVLHGAVGIVPSGFLFPLMQWGGRTHFLLAIVSQLSEVQESPAVFITFVCWCCIEIIRYPFYALSCLGNCPSFLTYLRYTIFIVLYPIGALGEMWVMYQSLPVIMEKNLYANYFSALPFTYHTFVKGVLICYPILWLQLYLYLFKQRRSKLRTRNNEKRKKRN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017747 |
|---|---|
| TK1151 ID | TkA08G053220 |
| OH-1004 ID | LXL04_017747 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017747 |
|---|---|
| Location | Chr04:643771-645794 (-) |
| Description | Similar to Hacd2: Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0007254 JNK cascade Biological Process GO:0007266 Rho protein signal transduction Biological Process GO:0030148 sphingolipid biosynthetic process Biological Process GO:0030497 fatty acid elongation Biological Process GO:0035338 long-chain fatty-acyl-CoA biosynthetic process Biological Process GO:0042761 very long-chain fatty acid biosynthetic process Biological Process GO:0045070 positive regulation of viral genome replication Biological Process GO:0046726 positive regulation by virus of viral protein levels in host cell Biological Process GO:1902532 negative regulation of intracellular signal transduction Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0031965 nuclear membrane Cellular Component |
| KEGG gene cross-reference | bta:613886 hsa:201562 mmu:57874 mmu:70757 pon:100172398 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04387.20PTPLA52-209 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017747 | PF04387.20 | PTPLA | 52 | 209 | 5.2e-51 | 173.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.