LXL04_017677 | RubberDandelionOmics

Gene overview

LXL04_017677

Reference: OH-1004 Chr: Chr03 Coordinates: 156629585-156631525 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

936 bp · LXL04_017677|LXL04_017677|OH1004|cDNA

ATGGAGAAACTGTTCAAAGTATACATCTATGAAGAGGGAGAGCAACCATTATTCCACATAGGGCCAGCCACAAACATTTACTCCATAGAAGGACTCTTTCTCAACTCTATAGAAAATGACTCGAAATTTAGGATATACGACCCAGATCAAGCCCATGTCTATTTCCTCCCATTTAGTGTTGTCATGATTCTCGATAAGCTTTTTGATCCTGTCATTCGTGACAAAGCTGTCCTAGAACGTGTTATTGGTGACTATGTGCA...

CDS

Download CDS FASTA

936 bp · LXL04_017677|LXL04_017677|OH1004|CDS

ATGGAGAAACTGTTCAAAGTATACATCTATGAAGAGGGAGAGCAACCATTATTCCACATAGGGCCAGCCACAAACATTTACTCCATAGAAGGACTCTTTCTCAACTCTATAGAAAATGACTCGAAATTTAGGATATACGACCCAGATCAAGCCCATGTCTATTTCCTCCCATTTAGTGTTGTCATGATTCTCGATAAGCTTTTTGATCCTGTCATTCGTGACAAAGCTGTCCTAGAACGTGTTATTGGTGACTATGTGCA...

Protein

Download Protein FASTA

311 aa · LXL04_017677|LXL04_017677|OH1004|PROTEIN

MEKLFKVYIYEEGEQPLFHIGPATNIYSIEGLFLNSIENDSKFRIYDPDQAHVYFLPFSVVMILDKLFDPVIRDKAVLERVIGDYVHIVSSRYPYWNRSLGSDHFMLSCHDWGPRATWYVHSLYFTSIRLLCNANTSEYFNPRKDASIPEINFYPSETTTITGGLPPSNRTTLAFFAGGQFHGKIRPLFFQHWKDKDEDIRVYERVPNNVSYLEMMKTSRFCICPSGFEVASPRIVEAIYAECVPVLISENYVLPFSDVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017677`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_017677

Location Chr03:156629585-156631525 (+)

Description Similar to At3g07620: Probable glycosyltransferase At3g07620

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07620`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g25310`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g20260`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017677 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G03795

ath:AT5G11130

ath:AT5G20260

ath:AT5G25310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.496

Rank 1 · LXL04_017677 · OH-1004

Endoplasmic reticulum0.332

Rank 2 · LXL04_017677 · OH-1004

Nucleus0.056

Rank 3 · LXL04_017677 · OH-1004

Cytoplasm0.054

Rank 4 · LXL04_017677 · OH-1004

Cell membrane0.038

Rank 5 · LXL04_017677 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016.21Exostosin_GT472-281 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017677	`PF03016.21`	Exostosin_GT47	2	281	2.7e-60	204.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SSE8`	Arabidopsis thaliana	Probable glycosyltransferase At3g07620	68.000%	Swiss-Prot	strong database homology
`Q9FFN2`	Arabidopsis thaliana	Probable glycosyltransferase At5g03795	56.066%	Swiss-Prot	strong database homology
`Q3E7Q9`	Arabidopsis thaliana	Probable glycosyltransferase At5g25310	50.161%	Swiss-Prot	strong database homology
`Q9LFP3`	Arabidopsis thaliana	Probable glycosyltransferase At5g11130	50.667%	Swiss-Prot	strong database homology
`Q3E9A4`	Arabidopsis thaliana	Probable glycosyltransferase At5g20260	49.355%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card