Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2121 bp · LXL04_017663|LXL04_017663|OH1004|cDNA
ATGGCGGCAATACTGGACAATCTCAGATTCTCAAGTTCATTTTGCATTCAAAAAATTGATACACATGGACGCAATTTCCCTAAAATCAAGAGGTTTCACAAATTTCGTATCGAGATGCAGAAGAGAGAATCAAAATCGCCCATCAAACGTGGTATTAATGGTGTACCTAATGGAATACCCCTAACCATTGATTCCAATGGTCAAATCATGAAGCTGAAAAATGATAGTATCCCAATAACTATGATTCCTATAAGCGAGGC...
2121 bp · LXL04_017663|LXL04_017663|OH1004|CDS
ATGGCGGCAATACTGGACAATCTCAGATTCTCAAGTTCATTTTGCATTCAAAAAATTGATACACATGGACGCAATTTCCCTAAAATCAAGAGGTTTCACAAATTTCGTATCGAGATGCAGAAGAGAGAATCAAAATCGCCCATCAAACGTGGTATTAATGGTGTACCTAATGGAATACCCCTAACCATTGATTCCAATGGTCAAATCATGAAGCTGAAAAATGATAGTATCCCAATAACTATGATTCCTATAAGCGAGGC...
Protein
Download Protein FASTA706 aa · LXL04_017663|LXL04_017663|OH1004|PROTEIN
MAAILDNLRFSSSFCIQKIDTHGRNFPKIKRFHKFRIEMQKRESKSPIKRGINGVPNGIPLTIDSNGQIMKLKNDSIPITMIPISEAMKKMNASEKRSGILSRLKQIVKRETTTAMVKPIELQKPSNFPQTEELNVLPSDESFSWATEDYNPIQRTINLCSFVVSLHVRLVLDNSKWSYPRGFTHNNQKTRRRKTASWLREQVLQLGPTFIKIGQLSSTRSDLFPHEIVTELAKLQDRVPAFSSTKAKCLIERELGSPVH...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017663 |
|---|---|
| TK1151 ID | TkA02G017180 |
| OH-1004 ID | LXL04_017663 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 97.231 / OH-1004 44.759Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017663 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:156265796-156269207 (+) | |||||||||
| Description | Similar to ABC1K7: Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006979 response to oxidative stress Biological Process GO:0007623 circadian rhythm Biological Process GO:0009644 response to high light intensity Biological Process GO:0010150 leaf senescence Biological Process GO:0034599 cellular response to oxidative stress Biological Process GO:0042542 response to hydrogen peroxide Biological Process GO:0046467 membrane lipid biosynthetic process Biological Process GO:0046686 response to cadmium ion Biological Process GO:1901031 regulation of response to reactive oxygen species Biological Process GO:1990641 response to iron ion starvation Biological Process GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G07700 ath:AT5G64940 syn:sll0095 syn:sll1770 syn:slr1919 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03109.23ABC1234-480 aaPF27536.1UbiB_helical510-562 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017663 | PF03109.23 | ABC1 | 234 | 480 | 1.9e-89 | 299.8 |
| LXL04_017663 | PF27536.1 | UbiB_helical | 510 | 562 | 9e-06 | 25.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.