Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2067 bp · LXL04_017489|LXL04_017489|OH1004|cDNA
ATGGCCAGCGAAAACGATCGAGCTCACGAAAAAAGTCCGGTAACAAGAATGCAACCATTTGGAGAAATAATCAAAACACCAGGCGGGGAGGCCAGCAAGATTAGCATGCCGGTCGTACCAATCACTGTCGAAAAAACAAGTATGGAGGATAACGAACGTACCAGGAAAACCCGGGAACTAGAAGAAGGAGCAGCGGTAAAAGAATACGAAGCCTTCAAGAAATTCCAAATGGCCCCGGAAAAATAtaaagaaaccaagaa...
2067 bp · LXL04_017489|LXL04_017489|OH1004|CDS
ATGGCCAGCGAAAACGATCGAGCTCACGAAAAAAGTCCGGTAACAAGAATGCAACCATTTGGAGAAATAATCAAAACACCAGGCGGGGAGGCCAGCAAGATTAGCATGCCGGTCGTACCAATCACTGTCGAAAAAACAAGTATGGAGGATAACGAACGTACCAGGAAAACCCGGGAACTAGAAGAAGGAGCAGCGGTAAAAGAATACGAAGCCTTCAAGAAATTCCAAATGGCCCCGGAAAAATATAAAGAAACCAAGAA...
Protein
Download Protein FASTA688 aa · LXL04_017489|LXL04_017489|OH1004|PROTEIN
MASENDRAHEKSPVTRMQPFGEIIKTPGGEASKISMPVVPITVEKTSMEDNERTRKTRELEEGAAVKEYEAFKKFQMAPEKYKETKKKKEMAVDEQLSSSSEDERRRRKMSRKKKGKTILTSEESEEETFKKRRTKKKDVESLEESEEERPKRRKKKKVIESSEESDKGQWKRIKIPKHMGVAKSQKRREHPLTPEAREARRYNKEFEKLNFRSPFTDDINETPVPKGLKGPRIKMYDGTGDPDDHVSNFQWAIKMIPMN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017489 |
|---|---|
| TK1151 ID | TkA02G038940 |
| OH-1004 ID | LXL04_017489 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 75.800 |
| Protein coverage (%) | TK1151 93.446 / OH-1004 50.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017489 |
|---|---|
| Location | Chr03:151687711-151693245 (-) |
| Description | Similar to NMD3: 60S ribosomal export protein NMD3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000055 ribosomal large subunit export from nucleus Biological Process GO:0015031 protein transport Biological Process GO:1902680 positive regulation of RNA biosynthetic process Biological Process GO:1904751 positive regulation of protein localization to nucleolus Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016020 membrane Cellular Component GO:0003723 RNA binding Molecular Function GO:0030674 protein-macromolecule adaptor activity Molecular Function GO:0043023 ribosomal large subunit binding Molecular Function |
| KEGG gene cross-reference | bta:509871 hsa:51068 pon:100174372 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF29994.1NMD3_N351-471 aaPF04981.20NMD3476-533 aaPF21192.4OB_NMD3533-621 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017489 | PF29994.1 | NMD3_N | 351 | 471 | 7e-29 | 101.7 |
| LXL04_017489 | PF04981.20 | NMD3 | 476 | 533 | 2.2e-15 | 57.7 |
| LXL04_017489 | PF21192.4 | OB_NMD3 | 533 | 621 | 2.4e-30 | 105.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.