LXL04_017474 | RubberDandelionOmics

Gene overview

LXL04_017474

Reference: OH-1004 Chr: Chr03 Coordinates: 149969797-149973922 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

585 bp · LXL04_017474|LXL04_017474|OH1004|cDNA

ATGGCCGCCATCTTAGCTCGCAAGTCCATGTCTGCTTTTCGCTATCGCCAGCTCACTGTAGCTGGACAACTATTGCAGGGCCCTAACACCAGTGTACGCTCATTTGCAACTAAACACTCTTTTTCCACTGATAAAGATGATGAAGAAAGAGAGAAGCTTGCAAGAGAAATGTCAAAAGACTGGAATTCCGTTTTTGAACGGAGTATTAATACGTTATTTTTAACCGAATTGGTTAGAGGTTTGTCTCTGACACTCAAATA...

CDS

Download CDS FASTA

585 bp · LXL04_017474|LXL04_017474|OH1004|CDS

ATGGCCGCCATCTTAGCTCGCAAGTCCATGTCTGCTTTTCGCTATCGCCAGCTCACTGTAGCTGGACAACTATTGCAGGGCCCTAACACCAGTGTACGCTCATTTGCAACTAAACACTCTTTTTCCACTGATAAAGATGATGAAGAAAGAGAGAAGCTTGCAAGAGAAATGTCAAAAGACTGGAATTCCGTTTTTGAACGGAGTATTAATACGTTATTTTTAACCGAATTGGTTAGAGGTTTGTCTCTGACACTCAAATA...

Protein

Download Protein FASTA

194 aa · LXL04_017474|LXL04_017474|OH1004|PROTEIN

MAAILARKSMSAFRYRQLTVAGQLLQGPNTSVRSFATKHSFSTDKDDEEREKLAREMSKDWNSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHESA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017474`
TK1151 ID	TkA02G041960
OH-1004 ID	LXL04_017474
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.855 / OH-1004 79.381 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017474

Location Chr03:149969797-149973922 (+)

Description Similar to NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79010`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release
`At1g16700`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017474 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006120 mitochondrial electron transport, NADH to ubiquinone Biological Process

GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0003954 NADH dehydrogenase activity Molecular Function

GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function

GO:0016651 oxidoreductase activity, acting on NAD(P)H Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function

KEGG gene cross-reference

ath:AT1G16700

ath:AT1G79010

bta:287027

nta:107776985

sot:102589342

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.953

Rank 1 · LXL04_017474 · OH-1004

Nucleus0.032

Rank 2 · LXL04_017474 · OH-1004

Cytoplasm0.023

Rank 3 · LXL04_017474 · OH-1004

Cell membrane0.017

Rank 4 · LXL04_017474 · OH-1004

Endoplasmic reticulum0.008

Rank 5 · LXL04_017474 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14697.12Fer4_21117-140 aa

PF00037.33Fer4121-140 aa

PF12837.13Fer4_6121-139 aa

PF13237.12Fer4_10121-174 aa

PF12838.13Fer4_7123-177 aa

PF13187.12Fer4_9123-178 aa

PF00037.33Fer4157-178 aa

PF14697.12Fer4_21158-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017474	`PF14697.12`	Fer4_21	117	140	2.3e-09	37.9
LXL04_017474	`PF00037.33`	Fer4	121	140	2.2e-14	53.3
LXL04_017474	`PF12837.13`	Fer4_6	121	139	3.1e-08	33.9
LXL04_017474	`PF13237.12`	Fer4_10	121	174	6.8e-07	29.8
LXL04_017474	`PF12838.13`	Fer4_7	123	177	7.1e-13	49.5
LXL04_017474	`PF13187.12`	Fer4_9	123	178	6.4e-08	33.2
LXL04_017474	`PF00037.33`	Fer4	157	178	2.2e-14	53.3
LXL04_017474	`PF14697.12`	Fer4_21	158	183	2.3e-09	37.9
LXL04_017474	`PF12837.13`	Fer4_6	158	178	3.1e-08	33.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42599`	Arabidopsis thaliana	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial	81.771%	Swiss-Prot	strong database homology
`Q9FX83`	Arabidopsis thaliana	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial	81.347%	Swiss-Prot	strong database homology

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